1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tacgaagattttatttatgctatatttatgtcaagttttgctatgtcaatgtgtgtatatcatttattagactcagaagaattctcatatccttgaacagGTACAAATATGAGAACAACAGAGTGATGGAGGCTTCCTCTCCTGATATGAGTTCACCGCTTCAATATCAACTTTATAATAATGGCAAAATAGGAATTGAT
species | Vitis vinifera |
transcript | Vv14s0083g00990.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAAGAGAAATAGAGAAAATTGATGTTAGAGCTGATGCAGAAGCCTTGAG GTACAAATATGAGAACAACAGAGTGATGGAGGCTTCCTCTCCTGAAATGAGEST: gi|254915548|gb|GR904979.1|GR904979
genomic: ACAAGAGAAATAGAGAAAATTGATGTTAGAGCTGATGCAGAAGCCTTGAGgtacttttat ... ccttgaacagGTACAAATATGAGAACAACAGAGTGATGGAGGCTTCCTCTCCTGATATGAG
EST: ACAAGAGAAATAGAGAAAATTGATGTTAGAGCTGATGCAAAAGCCTTGAG GTACAAATATGAGAACAACAGAATGATGGAGGCTTCCTCTCCTGATATGAG
genomic: ACAAGAGAAATAGAGAAAATTGATGTTAGAGCTGATGCAGAAGCCTTGAGgtacttttat ... ccttgaacagGTACAAATATGAGAACAACAGAGTGATGGAGGCTTCCTCTCCTGATATGAG
tcaatgtgtgtatatcatttattagactcagaagaattctcatatccttgaacagGTACAAATATGAGAACAACAGAGTGATGGAGGCTTCCTCTCCTGATATGAGTTCACCGCTTCAATATCAACTTTATAATAATGGCAAAATAGGAATTGAT
tatcctt CT-rich tract
tgtatatcatttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacgaagattttatttatgctatatttatgtcaagttttgctatgtcaatgtgtgtatatcatttattagactcagaagaattctcatatccttgaacagGTACAAATATGAGAACAACAGAGTGATGGAGGCTTCCTCTCCTGATATGAGTTCACCGCTTCAATATCAACTTTATAATAATGGCAAAATAGGAATTGAT
- - - - - - - - - - - - - - - - - - - -gctatgt
- - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaagaa