Sequence
atgc intronic sequence ATGC exonic sequence...gaaatgcttgggttttgagtttgaattgcaaatttctttattgaaaatcgatttgtgttataatatcctcaatttcctttattcttttggcattttgcagGTGAAGGTAGACCGGTGATGGATTGGGCAACTCGAGTAAAGGTTGCTGCTGGTGCAGCACGGGGAATAGCTTATCTACACGAGGACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0083g00330.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G51520.1 (Glycine max), 3'ss of exon 3
gaaatgcttgggttttgagtttgaattgcaaatttcttta-ttgaaaatcgatttgtgttataatatcctcaatttcctttattcttttggcattttgcagGTGAAGGTAGACCGGTGATGGATTGGGCAACTCGAGTAAAGGTTGCTGCTGGTGCAGCACGGGGAATAGCTTATCTACACGAGGACT
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ttcccatcattgttataaatccatgttttaggtttaaggacttaatagttcatctaaaatttaatcttaa-aatgtgaccagtaaatttaaatttttgcagGTGAAAATAGACCAGTTCTAGATTGGCCTACCAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACT
upper sequence: Vv14s0083g00330.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G28600.1 (Glycine max), 3'ss of exon 3
-gaaatgcttgggttttgagtttgaattgcaaatttcttta-ttgaaaatcgatttgtgttataatatcctcaatttcctttattcttttggcattttgcagGTGAAGGTAGACCGGTGATGGATTGGGCAACTCGAGTAAAGGTTGCTGCTGGTGCAGCACGGGGAATAGCTTATCTACACGAGGACT
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gttcccatcattgttataaatccatgttttaggtttaaggactttatagttcatctaaaatttgat--ctaaaacatgaccagtaaatttaaattttcgcagGTGAAAATAGACCAGTTTTAGATTGGCCTACTAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACT
upper sequence: Vv14s0083g00330.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G20300.1 (Glycine max), 3'ss of exon 6
gaaatgcttgggttttgagtttgaattgcaaatttctttattgaaaatcgatttgtgttataatatcctcaatttcctttattcttttggcattttgcagGTGAAGGTAGACCGGTGATGGATTGGGCAACTCGAGTAAAGGTTGCTGCTGGTGCAGCACGGGGAATAGCTTATCTACACGAGGACT
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----------------------------------------tttatagttcatctaaaatttaatcttaa-aatgtgaccagtaaatttaaatttttgccggtgaaaatagaccagttctagattggcctacctgagtcaagGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatcgatttgtgttataatatcctcaatttcctttattcttttggcattttgcagGTGAAGGTAGACCGGTGATGGATTGGGCAACTCGAGTAAAGGTTGCTGCTGGTGCAGCACGGGGAATAGCTTATCTACACGAGGACT
atttgtgttataatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaatgcttgggttttgagtttgaattgcaaatttctttattgaaaatcgatttgtgttataatatcctcaatttcctttattcttttggcattttgcagGTGAAGGTAGACCGGTGATGGATTGGGCAACTCGAGTAAAGGTTGCTGCTGGTGCAGCACGGGGAATAGCTTATCTACACGAGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - tgcttgg
- - - - - - - - - - - - - - - - - - - - - gaaaatc