1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cctatgacagctgcaggctctataagacatgaacttgcatctaattgaagtatgaactagtgtcgtcttcaaattgacaattctagtatatttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTTGTTGCAGGGCAGCATATGTGAAAAGATGTGTCTTTACTTCTTCTTTAC
species | Vitis vinifera |
transcript | Vv14s0083g00320.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTEST: gi|110718836|gb|EE096125.1|EE096125
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTEST: gi|27580474|gb|CB003169.1|CB003169
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTEST: gi|110711942|gb|EE088999.1|EE088999
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTEST: gi|110711381|gb|EE087792.1|EE087792
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTEST: gi|110710841|gb|EE087354.1|EE087354
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTEST: gi|110730041|gb|EE106669.1|EE106669
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTEST: gi|110729823|gb|EE106203.1|EE106203
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTEST: gi|71863035|gb|DT012090.1|DT012090
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTEST: gi|37184998|gb|CF604351.1|CF604351
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCEST: gi|110371210|gb|EC935047.1|EC935047
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTT-CTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGC
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTEST: gi|161717840|gb|FC066608.1|FC066608
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTEST: gi|294963758|gb|GW836608.1|GW836608
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTEST: gi|161718910|gb|FC068628.1|FC068628
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
tgaagtatgaactagtgtcgtcttcaaattgacaattctagtatatttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTTGTTGCAGGGCAGCATATGTGAAAAGATGTGTCTTTACTTCTTCTTTAC
aattgac putative branch site (score: 3)
tatttttttc putative PPT
aaattgacaattctag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctatgacagctgcaggctctataagacatgaacttgcatctaattgaagtatgaactagtgtcgtcttcaaattgacaattctagtatatttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCTTGTTGCAGGGCAGCATATGTGAAAAGATGTGTCTTTACTTCTTCTTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - gcaggct
- - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - gcatcta
- - - - - - - - - - - - - - - - - - - - - - - - - tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga