1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaggcccacctgcctaactttcctgcagattgggacagaatttaaaatgcataggttgaacctattagaagagttgctgaaccttcttaccttttttcagGAACCAGGCAAGACTACAGAGAAACCTCATGTACCTGGCTGCAATCGCTGATTCTCAACCCCAACCACCCACCATGCATGCTCAG
species | Vitis vinifera |
transcript | Vv14s0081g00200.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGATTGTTGAGAGCCAGAATTCAGGAAAATTGACTGAATGTGCAGA GAACCAGGCAAGACTACAGAGAAACCTCATGTACCTGGCAGCAATTGCTGAEST: gi|110733165|gb|EE109120.1|EE109120
genomic: CTGAAGATTGTTGAGAGCCAGAATTCAGGAAAATTGACTGAATGTGCAGAgtaagtatgc ... cttttttcagGAACCAGGCAAGACTACAGAGAAACCTCATGTACCTGGCTGCAATCGCTGA
EST: CTGAAGATTGTTGAGAGCCAGAATTCAGGAAAATTGACTGAATGTGCAGA GAACCAGGCAAGACTACAGAGAAACCTCATGTACCTGGCTGCAATCGCTGAEST: gi|37187930|gb|CF607281.1|CF607281
genomic: CTGAAGATTGTTGAGAGCCAGAATTCAGGAAAATTGACTGAATGTGCAGAgtaagtatgc ... cttttttcagGAACCAGGCAAGACTACAGAGAAACCTCATGTACCTGGCTGCAATCGCTGA
EST: GGAAAATTGACTGAATGTGCAGA GAACCAGGCAAGACTACAGAGAAACCTCATGTACCTGGCTGCAATCGCTGAEST: gi|77581760|gb|DV219834.1|DV219834
genomic: GGAAAATTGACTGAATGTGCAGAgtaagtatgc ... cttttttcagGAACCAGGCAAGACTACAGAGAAACCTCATGTACCTGGCTGCAATCGCTGA
EST: CTGAAGATTGTTGAGAGCCAGAATTCAGGAAAATTGACTGAATGTGCAGA GAACCAGGCAAGACTACAGAGAAACCTCATGTACCTGGCTGCAATTGCTGA
genomic: CTGAAGATTGTTGAGAGCCAGAATTCAGGAAAATTGACTGAATGTGCAGAgtaagtatgc ... cttttttcagGAACCAGGCAAGACTACAGAGAAACCTCATGTACCTGGCTGCAATCGCTGA
aatgcataggttgaacctattagaagagttgctgaaccttcttaccttttttcagGAACCAGGCAAGACTACAGAGAAACCTCATGTACCTGGCTGCAATCGCTGATTCTCAACCCCAACCACCCACCATGCATGCTCAG
ttcttac putative branch site (score: 2)
ccttcttacctttttt CT-rich tract
tattagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggcccacctgcctaactttcctgcagattgggacagaatttaaaatgcataggttgaacctattagaagagttgctgaaccttcttaccttttttcagGAACCAGGCAAGACTACAGAGAAACCTCATGTACCTGGCTGCAATCGCTGATTCTCAACCCCAACCACCCACCATGCATGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - cccacct
- - - - - -gcctaac
- - - - - - - - - - tcctgca
- - - - - - - - - - - - - - - - - - - - - - - -tgcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa