Sequence
atgc intronic sequence ATGC exonic sequence...ttccatgcctgttccatctctttataagcaattaaaacatcggtcaatctgtatatgtttagttgccatccccttttaacttaatggcttatttcttcagGAAACAAATGAAAATCTGGAGGATGCAAGCAATGAGTTGATTCTCACAGACGAGGAGATGGTCCGCTTCCAGATAGGAGAGGTTTTTGCTCATGTGCCGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0081g00080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G30520.1 (Glycine max), 3'ss of exon 2
ttccatgcctgttccatctct-ttataagcaattaaaacatcggtcaatctgtatatgtttagttgccatccccttttaacttaatggctt--atttcttcagGAAACAAATGAAAATCTGGAGGATGCAAGCAATGAGTTGATTCTCACAGACGAGGAGATGGTCCGCTTCCAGATAGGAGAGGTTTTTGCTCATGTGCCGA
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---tgctgctatccaggctttgctatggcaagatccattgtaggcttctttttccacattatgatgcaaatacagcaaggttttattttttcaatctttgtagGAAACAAATGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGATGAAGAGGTCATTCGGTTTCAAATAGGAGAGGTTTTTGCTCATGTGCCAA
upper sequence: Vv14s0081g00080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G36840.1 (Glycine max), 3'ss of exon 2
ttccatgcctgttccatctctttataa--gcaattaaaacatcggtcaatctgtatatgtttagttgccatccccttttaact-taatggcttatttcttcagGAAACAAATGAAAATCTGGAGGATGCAAGCAATGAGTTGATTCTCACAGACGAGGAGATGGTCCGCTTCCAGATAGGAGAGGTTTTTGCTCATGTGCCGA
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---cactgctattcaggcattttgctatggcaaacccattgtaggctttttttttcatagtatgatgcaaatacggcaaggttctaattttcaatctttacagGAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGATGAAGAGGTCATTCGGTTTCAAATAGGAGAGGTTTTTGCTCATGTGCCAA
upper sequence: Vv14s0081g00080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G08780.1 (Arabidopsis thaliana), 3'ss of exon 2
--ttccatgcctgttccatctctttataagca--attaaaacatcggtcaatctgtatatgtttagttgccatccccttttaacttaatggcttatttcttcagGAAACAAATGAAAATCTGGAGGATGCAAGCAATGAGTTGATTCTCACAGACGAGGAGATGGTCCGCTTCCAGATAGGAGAGGTTTTTGCTCATGTGCCGA
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gatacttgtcttgttcaatcgtttcattagggggattaaaacagcattcta-ctgtgtgtttctgcat-ctagcttgattaaaa--aacaattgatttatgcagGAAAAGTGTGAAAATCTAGAGGATGCAGGGAACGAGTTGATCCTTGCTGATGAGGAGATGGTGCGTTTTCAAATAGGAGAAGTGTTTGCTCATGTGCCGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110725302|gb|EE101647.1|EE101647EST: GACTAAACAACAGATTTCACGAGCTCGAAGATGAGATCAAGATGGCCAAG GAAACAAATGAAAATCTGGAGGATGCAAGCAATGAGTTGATTCTCACAGAC
genomic: GACTAAACAACAGATTTCACGAGCTCGAAGATGAGATCAAGATGGCCAAGgtaataaaga ... atttcttcagGAAACAAATGAAAATCTGGAGGATGCAAGCAATGAGTTGATTCTCACAGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatctgtatatgtttagttgccatccccttttaacttaatggcttatttcttcagGAAACAAATGAAAATCTGGAGGATGCAAGCAATGAGTTGATTCTCACAGACGAGGAGATGGTCCGCTTCCAGATAGGAGAGGTTTTTGCTCATGTGCCGA
cttatttcttc CT-rich tract
ttttaacttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttccatgcctgttccatctctttataagcaattaaaacatcggtcaatctgtatatgtttagttgccatccccttttaacttaatggcttatttcttcagGAAACAAATGAAAATCTGGAGGATGCAAGCAATGAGTTGATTCTCACAGACGAGGAGATGGTCCGCTTCCAGATAGGAGAGGTTTTTGCTCATGTGCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- ccatgcc
- - - - - - -ccatctc
- - - - - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggct