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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattctatcttccacaaaatttatgagagccaacatgagatgaaaaagaaaatttctaacttagtctacctatttgtgaaaatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGA

Basic information

species Vitis vinifera
transcript Vv14s0081g00010.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0081g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G04730.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaattctatcttccacaaaatttatgagagccaacatgagatgaaaaagaaaatttctaacttagtctacctatttgtgaaaatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGA
|||| |  |  ||  |||| || | |     | || |   |||       |  || | |   ||    |    | || |    || ||| |||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||| || ||||| || || || |||||||| |||||
gtaaataaaaattg-acaatatatctatctactaaaacatgatcctttttatcatatattgtttgaaatttgaaatttt----atttttcagGCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGATCGATCTTCTAAACGGATCAGATTATGTTCCAACATATGAAGATAAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110370217|gb|EC929130.1|EC929130
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|34363463|gb|CF405048.1|CF405048
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAA-GAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110386441|gb|EC951035.1|EC951035
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110357652|gb|EC921294.1|EC921294
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|30133393|gb|CB918732.1|CB918732
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATTGAGAGCAA-TTG
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAAT-GAGAGCAAATTG
EST: gi|110357044|gb|EC920312.1|EC920312
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110358344|gb|EC922490.1|EC922490
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|30321834|gb|CD005096.1|CD005096
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110382415|gb|EC939426.1|EC939426
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|30125491|gb|CB910830.1|CB910830
EST:     GGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: GGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110421032|gb|EC987319.1|EC987319
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110370114|gb|EC934294.1|EC934294
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110387706|gb|EC952397.1|EC952397
EST:     AGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: AGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110359936|gb|EC922298.1|EC922298
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110395704|gb|EC961374.1|EC961374
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|30129712|gb|CB915051.1|CB915051
EST:     GGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: GGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110389158|gb|EC953976.1|EC953976
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110359422|gb|EC920879.1|EC920879
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110685024|gb|EE062971.1|EE062971
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|71868931|gb|DT017986.1|DT017986
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|18458150|gb|BM436428.1|BM436428
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCANATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110360880|gb|EC924322.1|EC924322
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|71865802|gb|DT014857.1|DT014857
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110421723|gb|EC988023.1|EC988023
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110703564|gb|EE080519.1|EE080519
EST:     TCAAGAACTCTCTGATGCCCTAAGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110726327|gb|EE102012.1|EE102012
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110357840|gb|EC921623.1|EC921623
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110424930|gb|EC991305.1|EC991305
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|18459524|gb|BM437802.1|BM437802
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110710653|gb|EE086986.1|EE086986
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAA-TGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAAGAATGGAAG-ATTTCATGAATGAAAGCAAATTG
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATG-AAGGATTTCATGAATGAGAGCAAATTG
EST: gi|110691259|gb|EE069153.1|EE069153
EST:     TCAAGAACTCTCTGATGCCCTANGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAAGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|37190249|gb|CF609598.1|CF609598
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110709078|gb|EE084223.1|EE084223
EST:     TCAAGAACTCTCTGATGCCCTAAGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGGTGG-TCCACAAGGAATGAAGGATTT
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTG-TGGATC-ACAAGGAATGAAGGATTT
EST: gi|110359559|gb|EC921247.1|EC921247
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|71874129|gb|DT023184.1|DT023184
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110357411|gb|EC920932.1|EC920932
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|77579377|gb|DV218517.1|DV218517
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110685504|gb|EE062284.1|EE062284
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAACGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|22010332|gb|BQ795366.1|BQ795366
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110686317|gb|EE063813.1|EE063813
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAACGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|18458727|gb|BM437005.1|BM437005
EST:     CAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: CAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|71876825|gb|DT025880.1|DT025880
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAG
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAG
EST: gi|34414970|gb|CF413724.1|CF413724
EST:     GGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: GGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|71870573|gb|DT019628.1|DT019628
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|18459647|gb|BM437925.1|BM437925
EST:     TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: TCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
EST: gi|110703290|gb|EE080007.1|EE080007
EST:     CCCTAAGCAAAATGTTCAGCTCCTTTACTATTG                         GCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA
genomic: CCCTAGGCAAAATGTTCAGCTCCTTTACTATTGgtaattctat ... aatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagatgaaaaagaaaatttctaacttagtctacctatttgtgaaaatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGA
                  ttctaac  putative branch site (score: 1)
       aaaaagaaaatttcta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattctatcttccacaaaatttatgagagccaacatgagatgaaaaagaaaatttctaacttagtctacctatttgtgaaaatattttagGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA