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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtagttaaacagcaagcttttaccttccagatttaaaacctttgttctgatctctccatcaaacattgcacctgtatattatgacacaagattgggtgaaatttaaccagtatttttttggctttgtctcagGTGGACCAATTAGGCAGGCAAGACCAATTGAGTTTCAAGGCATCCAAAGTTCTGACACAATCAAAGTTGATATCCTTGTATGGAAATGACAAGAGTTCAT

Basic information

species Vitis vinifera
transcript Vv14s0068g02130.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720088|gb|FC066732.1|FC066732
EST:     ATTTCCGTGCTCTTCTTCAGCAATCAAAGGGAGGAGCTGCAAACGAATTG                         GTGGACCAATTAGGCAGGCAAGACCAATTGAGTTTCAAGGCATCCAAAGTT
genomic: ATTTCCGTGCTCTTCTTCAGCAATCAAAGGGAGGAGCTGCAAACGAATTGgtgtgtagtt ... tttgtctcagGTGGACCAATTAGGCAGGCAAGACCAATTGAGTTTCAAGGCATCCAAAGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatgacacaagattgggtgaaatttaaccagtatttttttggctttgtctcagGTGGACCAATTAGGCAGGCAAGACCAATTGAGTTTCAAGGCATCCAAAGTTCTGACACAATCAAAGTTGATATCCTTGTATGGAAATGACAAGAGTTCAT
                       atttaac  putative branch site (score: 3)
                                            ctttgtctc  putative PPT
                     aaatttaaccagtatt  TA-rich tract