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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattcaatcaaactaaagttacaaatggagaatatgcttctgtctttgtgtctccaaagaaatttgatgatgatagaattatgatctgatgccatgccaattacctttgtccatataatcattaagttgcccagctcactattgttttcttgaatgaagGATTTTCGACATATGGTGCTTGCATATCCCTGTTATGGATCGAACACCATTTACAG

Basic information

species Vitis vinifera
transcript Vv14s0068g01440.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G05570.1 (Glycine max), 3'ss of exon 2
gtaagcattcaatcaaactaaagttacaaatgga--gaatatgcttctgtctt-----tgtgtctccaaagaaatttgatga--tgatagaattatgatctgatgccatgccaattacctttgtccatataatcatt---aagttgcccagctcactattgttttcttgaatgaagGATTTTCGACATATGGTGCTTGCATATCCCTGTTATGGATCGAACACCATTTACAG
||  |  |||| | ||  | |||    || || |   |  |   ||   | ||     || |  |   | |  ||  |||||  |   |    ||   |||      |||    |    | ||   |  | ||   |   || ||  |    |   | |||||||||||||||||||||||| || ||||||||||||||||| || ||   |||||||||| |||||||||
gtttgtgttcatttaattttaaggcctaagtgcacccaccaaattttcattttaggaatgcgctttttaggtgatgagatgaatttgaaagggtaccttctagctggatgttgctcctgtgtgattaactgatatgtgagaaattctctttttgttttttgttttcttgaatgaagGATTTTTGATATATGGTGCTTGCATATTCCAGTCGCGGATCGAACATCATTTACAG

upper sequence: Vv14s0068g01440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G05580.1 (Glycine max), 3'ss of exon 2
gtaagcattcaatcaaactaaagttacaaatgga-------gaatatgcttctgtctttgtgtctccaaagaaatttgatgatgatagaattatg----atctgatgccatgccaattacctttgtccatataatcat---taagttgcccagctcactattgtttt--cttgaatgaagGATTTTCGACATATGGTGCTTGCATATCCCTGTTATGGATCGAACACCATTTACAG
||  |  |||| | ||  | |||    || || |        | | |  || |     ||    |   | |  ||  |||||   |  |   |      ||||  |  |  |    |   ||| |   || || | ||   | ||     |   |   | || ||||  ||||||||||||||||| || ||||||||||||||||| || ||    ||||| |||||||||||||
gtttgagttcatttaattttaaggcctaactgcactcaccaaattgtcattttaggaatgcacatattaggtgatgagatgaatttgaagccaaagtgtatcttctagctggatggtgctcttgggttatttactgatatgtgagaaatacgtttttttgttcttttttcttgaatgaagGATTTTTGATATATGGTGCTTGCATATTCCAGTCGCTGATCGGACACCATTTACAG

upper sequence: Vv14s0068g01440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G27200.1 (Glycine max), 3'ss of exon 2
gtaagcattcaatcaaactaaagttacaaatgga--gaatatgc-ttctgtctttgtgtctccaaagaaatttgatgatgatagaattatgatctgatgccatgccaattacctttgtccatataatcattaagttgcccag----ctcactattgttttcttgaatgaagGATTTTCGACATATGGTGCTTGCATATCCCTGTTATGGATCGAACACCATTTACAG
||  |  |||| | ||  | |||    || || |   ||| | | || |     ||    |   | |  ||| |||||   |  |   |   | |     |  ||    |     | |     || |   | |  ||         ||   | || |||||| |||||||||||||| || || |||||||||||||| || ||    ||||| ||||| |||||||
gtttgtgttcatttaattttaaggcctaagtgcaccaaattttcattttaggaatgcactttttaggcgattagatgaatttgaagccaaagtgtatcttctagctggatggtgctcttgggttattttctgatatgtgagagatactttttttttttttctcgaatgaagGATTTTTGATATGTGGTGCTTGCATATTCCAGTCGCTGATCGGACACCGTTTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgtccatataatcattaagttgcccagctcactattgttttcttgaatgaagGATTTTCGACATATGGTGCTTGCATATCCCTGTTATGGATCGAACACCATTTACAG
                            agctcac  putative branch site (score: 3)
                                     ttgttttctt  putative PPT
        atataatcattaagtt  TA-rich tract