Sequence
atgc intronic sequence ATGC exonic sequencegtaagcattcactcaaacttaattgccccttattagttaaacccgtggagaatatgcttgtacttgtctgtctttgaaaaagctagatgatgagatagaattgtttcctatcataggccatgtttggtataattattaaattgcctaatttatgattgttttcttgaatggagGCTTTTTGATATATGGTGCTTGCATATTCCTGTTGAGGATCGAACAACGTTTACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G05570.1 (Glycine max), 3'ss of exon 2
gtaagcattcactcaaacttaattgccccttattagttaaacccgtggagaatatgcttgtacttgtctgtctttgaaaaagctagatga---tgagatagaattgttt--cctatcataggccatgtttggt------ataattattaaattgcctaatttatgattgttttcttgaatggagGCTTTTTGATATATGGTGCTTGCATATTCCTGTTGAGGATCGAACAACGTTTACAG
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gtttgtgttcatttaattttaag-gcc------taagtgcacccaccaaattttcattt-taggaatgcgctttttaggtgatgagatgaatttgaaagggtaccttctagctggatgttgctcctgtgtgattaactgatatgtgagaaattctctttttgttttttgttttcttgaatgaagGATTTTTGATATATGGTGCTTGCATATTCCAGTCGCGGATCGAACATCATTTACAG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G05580.1 (Glycine max), 3'ss of exon 2
gtaagcattcactcaaacttaattgcc--ccttattagttaaacc--cgtggagaatatgcttgtacttgtctgtctt-tgaa---aaagctagatgatgagatagaattgtttccta-tcataggccatgtttggtataattattaaattgcctaatttatgattgttttcttgaatggagGCTTTTTGATATATGGTGCTTGCATATTCCTGTTGAGGATCGAACAACGTTTACAG
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gtttgagttcatttaattttaaggcctaactgcactcaccaaattgtcattttaggaatgcacatattaggtgatgagatgaatttgaagccaaagtgtatcttctagctggatggtgctcttgggttatttactg-atatgtgagaaatacgtttttttgttctt-ttttcttgaatgaagGATTTTTGATATATGGTGCTTGCATATTCCAGTCGCTGATCGGACACCATTTACAG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G27200.1 (Glycine max), 3'ss of exon 2
gtaagcattcactcaaacttaattgccccttattagttaaacccgtggagaatatgcttgtacttgtctgtctttgaaaaagctagatgatgagatagaattgtttcctatcataggccatgtttggtataattattaaattgcctaa----tttatgattgttttcttgaatggagGCTTTTTGATATATGGTGCTTGCATATTCCTGTTGAGGATCGAACAACGTTTACAG
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gtttgtgttcatttaattttaa--ggcctaagtgcaccaaattttc--attttaggaatgcactttttaggcgattagatgaatt--tgaagccaaagtgtatcttctagctggatggtgctcttgggttattttctgatatgtgagagatactttttttttttttctcgaatgaagGATTTTTGATATGTGGTGCTTGCATATTCCAGTCGCTGATCGGACACCGTTTACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgtttggtataattattaaattgcctaatttatgattgttttcttgaatggagGCTTTTTGATATATGGTGCTTGCATATTCCTGTTGAGGATCGAACAACGTTTACAG
gcctaat putative branch site (score: 3)
ttgttttctt putative PPT
tataattattaaattg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcattcactcaaacttaattgccccttattagttaaacccgtggagaatatgcttgtacttgtctgtctttgaaaaagctagatgatgagatagaattgtttcctatcataggccatgtttggtataattattaaattgcctaatttatgattgttttcttgaatggagGCTTTTTGATATATGGTGCTTGCATATTCCTGTTGAGGATCGAACAACGTTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT