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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattgcttggatatttataaaatttcatgtttatgtgcatttgttcccattgaattatccacataaatgtgatttttcatattgatctttccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTGATCGAACGTAACTCCAATGACAATAACAAGACATTGAA

Basic information

species Vitis vinifera
transcript Vv14s0068g01300.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 2
---tattgcttggatatttataaaatttcatgtttatgtgcatttgttcccattgaattatccacat-aaatgtgattt--ttcatattgatctttccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTGATCGAACGTAACTCCAATGACAATAACAAGACATTGAA
   | |||| ||  |   | | |  || || | |||| | | |   ||      |  |||    |||   || | |     | |||||| ||  || ||    ||||| ||||| || || || ||| ||||||| || ||||||||||| |||||  | || ||  |||||||||||| |||||||||||| ||
ggattttgcatgact--ctgttatgttgcaaggttatctccttcaattatttcagtgttaattgcattggatattaaccaatccatatttatggtttca----cagGATTGCTTCGGTAGGCCCATAGCAAGTGCACCAGATGCTTGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAA

upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G26210.1 (Glycine max), 3'ss of exon 2
tattgct--tggatatttataaaatttcat-gtttatgtgcatttgttcccattgaattatccacataaatgtgatttttcatattgatctttccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTGATCGAACGTAACTCCAATGACAATAACAAGACATTGAA
| |  ||  | |||      | ||| | ||     |||    | |||     | || ||||  |  |   | | ||||||  | ||  | | |   ||  |||||||| ||||| ||||||||  |||||||||||||||||||||| |||||  |||||||  |||| ||||| || ||||||||| ||||
tgtgactactagatcgcatcataatgtaattagcaatgcaggtatgtgattgt-gacttatgaagttttttataattttt--tttttgtttgttttttcgcagGACTGTTTTGGGAGACCAATTGCAAGTGCTCCTGATGCTTGGTTTGATGTTGTCGAACGCTACTCGAATGATAACAACAAGACACTGAA

upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 2
--------tattgcttggatatttataaaatt--tcatgtttatgtgcatttgttcccattgaattatccacataaatgtgatttttcatattgatctttccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTGATCGAACGTAACTCCAATGACAATAACAAGACATTGAA
         |    | | ||  | ||  | ||    |||   || |    ||||  |   | || | |  | ||||||    ||||||   ||| | ||||      |||||||| ||||| ||||||||  | |||||||||||||| ||||| |||||  |||||||  |||| ||||| || ||||||||| ||||
gtgtgactaacgaatcgcattctaatgtagttagcaatgcagatatttgattgtgacttataaagttttta-ataaat----tttttctgtttggtttttc-----gcagGACTGTTTTGGGAGACCAATTGCGAGTGCTCCTGATGCATGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAA

upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G23670.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------------------tattgcttggatatttata-aaatttcatgtttatgtgcatttgttcccattgaattatccacataaatg---tgatttttcatattgatct---ttccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTGATCGAACGTAACTCCAATGACAATAACAAGACATTGAA
                                                |||||      || ||||  ||  || | |  | |||| || | |  |   ||| ||   |   |  |     ||||   | || || ||||   ||    |   |||| || |||| | |||| ||||| ||||| |||||||||||||| |||||| | || ||  |||| |||||||| ||||||||  | ||
gtaaattcattatcaaatctatgattctgttaacaaaatcgaattgattattggcattgtagttatgcaagctttaagcgt-tgtgaatgtttggcttatgagtttctcgtgtttactgcttgatgactaatgtttatctccgttttgcttcaagGATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352778118|gb|FQ467171.1|FQ467171
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349823630|gb|FQ415040.1|FQ415040
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349832894|gb|FQ423016.1|FQ423016
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|351033557|gb|FQ447716.1|FQ447716
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|351041981|gb|FQ456191.1|FQ456191
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|351054108|gb|FQ450190.1|FQ450190
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|352773004|gb|FQ470619.1|FQ470619
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|351046320|gb|FQ448625.1|FQ448625
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|351054020|gb|FQ441786.1|FQ441786
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349808540|gb|FQ405684.1|FQ405684
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349807664|gb|FQ402055.1|FQ402055
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACACCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349820492|gb|FQ408442.1|FQ408442
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349822627|gb|FQ412891.1|FQ412891
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCAATGTCTTCGTATTCAG                         GGCTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|351015401|gb|FQ447230.1|FQ447230
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349819861|gb|FQ404535.1|FQ404535
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GGCTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349819166|gb|FQ412060.1|FQ412060
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349820920|gb|FQ408628.1|FQ408628
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATCCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|351056259|gb|FQ453721.1|FQ453721
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|352782149|gb|FQ470051.1|FQ470051
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|351037559|gb|FQ462542.1|FQ462542
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349813001|gb|FQ411241.1|FQ411241
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|351021667|gb|FQ437052.1|FQ437052
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349822644|gb|FQ412908.1|FQ412908
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|352789617|gb|FQ476215.1|FQ476215
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|351032559|gb|FQ458924.1|FQ458924
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|352772806|gb|FQ473844.1|FQ473844
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349808891|gb|FQ406741.1|FQ406741
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|351032958|gb|FQ461847.1|FQ461847
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTGGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349823382|gb|FQ402581.1|FQ402581
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GGCTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349826514|gb|FQ418605.1|FQ418605
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349810608|gb|FQ402851.1|FQ402851
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GGCTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|349817896|gb|FQ407885.1|FQ407885
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATCCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
EST: gi|351057058|gb|FQ448575.1|FQ448575
EST:     GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG                         GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG
genomic: GCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAGgtacttattg ... ccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccattgaattatccacataaatgtgatttttcatattgatctttccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTGATCGAACGTAACTCCAATGACAATAACAAGACATTGAA
                                  tattgat  putative branch site (score: 3)
                                        tctttccatt  CT-rich tract
                 ataaatgtgatttttc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tattgcttggatatttataaaatttcatgtttatgtgcatttgttcccattgaattatccacataaatgtgatttttcatattgatctttccattgacagGACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTGATCGAACGTAACTCCAATGACAATAACAAGACATTGAA

- -tgcttgg
- - - - - - - - ataaaat
- - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacata