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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcctatcaaactttgacttctttcctccccaattcgccactttatagtactaagctataactactgattatgtgaaaactttgcagATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT

Basic information

species Vitis vinifera
transcript Vv14s0068g01260.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G14040.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgcctatcaaactttgacttctttcctccccaattcgccactttatagtactaagctataactactgattatgtgaaaactttgcagATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
||  |  | ||||           ||  |||||    | |  |||   |||   |  | | | | | |||||| |        ||||||| ||||| |||||  ||| ||| |||||||||||||||||||| |
gtgagtttttcaataccaataacattatctccc----ttgttactgc-tagccttttggtctgatttctgatttt--------tttgcagCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402024|gb|CF207651.1|CF207651
EST:     GGTCTGTCAGATGGATTTCCCAAGTTTGTTAAATCCGAAGGTGCCTTGGG                         ATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
genomic: GGTCTGTCAGATGGATTTCCCAAGTTTGTTAAATCCGAAGGTGCCTTGGGgtatgcctat ... aactttgcagATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
EST: gi|110366072|gb|EC929727.1|EC929727
EST:     GGTCTGTCAGATGGATTTCCCAAGTTTGTTAAATCCGAAGGTGCCTTGGG                         ATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
genomic: GGTCTGTCAGATGGATTTCCCAAGTTTGTTAAATCCGAAGGTGCCTTGGGgtatgcctat ... aactttgcagATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
EST: gi|110707594|gb|EE084171.1|EE084171
EST:     GGTCTGTCAAATGGATTTCCCAAGTTTGTTAAATCCGAAAGTGCCTTGGG                         ATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCCGATTCCCT
genomic: GGTCTGTCAGATGGATTTCCCAAGTTTGTTAAATCCGAAGGTGCCTTGGGgtatgcctat ... aactttgcagATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
EST: gi|71865829|gb|DT014884.1|DT014884
EST:     GGTCTGTCAGATGGATTTCCCAAGTTTGTTAAATCCGAAGGTGCCTTGGT                         ATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
genomic: GGTCTGTCAGATGGATTTCCCAAGTTTGTTAAATCCGAAGGTGCCTTGGGgtatgcctat ... aactttgcagATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
EST: gi|110685233|gb|EE063420.1|EE063420
EST:     GGTCTGTCAGATGGATTTCCCAAGTTTGTTAAATCCGAAGGTGCCTTGGG                         ATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
genomic: GGTCTGTCAGATGGATTTCCCAAGTTTGTTAAATCCGAAGGTGCCTTGGGgtatgcctat ... aactttgcagATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
EST: gi|110379440|gb|EC944634.1|EC944634
EST:     GGTCTGTCAGATGGATTTCCCAAGTTTGTTAAATCCGAAGGTGCCTTGGG                         ATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
genomic: GGTCTGTCAGATGGATTTCCCAAGTTTGTTAAATCCGAAGGTGCCTTGGGgtatgcctat ... aactttgcagATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcgccactttatagtactaagctataactactgattatgtgaaaactttgcagATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
                              tactgat  putative branch site (score: 2)
         tttatagta  TA-rich tract