Sequence
atgc intronic sequence ATGC exonic sequence...tgagactctgtgaatatagggtttcagtttatttgttgaagtgcactttctagttagtctttggttcatattgtgggctaaacttggaaactttgtgcagGCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G27570.2 (Glycine max), 3'ss of exon 2
-----------------------------------------------tgagactct--gtgaatatagggtttcagtttatttgttgaagtgcact---------ttctagttagtctttggttcatattgtgggctaaacttggaaactttgtg------cagGCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGG
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gtttgcattaaatgtcaacatagattattgatgtctaacttcaattctgaatttcttattggagaacaacaccgaaaatatctaatgaattgtatccaagttttgtcctttttaacttttaaaaaaaaataaaaaatagaatctgaggttgggaatgaaaacagGATAACAGGGGGCTTGGACTCACTGCACATATTATTGATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGG
upper sequence: Vv14s0068g01150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G27570.1 (Glycine max), 3'ss of exon 2
tgagactctgtgaatatagggtttcagtttatttgttgaagtgcactttctag---ttagtctttggttcatattgtgggctaaacttggaaactttgtgcagGCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGG
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aacaacaccgaaaatatctaatg--aattgtatccaagttttgtcctttttaacttttaaaaaaaaataaaaaatagaatctgaggttgggaa-tgaaaacagGATAACAGGGGGCTTGGACTCACTGCACATATTATTGATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGG
upper sequence: Vv14s0068g01150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G08660.1 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------------------------------tgagactctgtgaatatagg-----gtttcagttt--atttgttgaagtgcactttctagttagtctttggt---tcatat-tgtgggctaaacttggaaactttgt-gcagGCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGG
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gtttgtctcctttcccagtttctttgattctggacttgttacttttctatatggattcttcggatttggatcgatgccacagttttggtttattatggcgcactagtt--ttgattttggataaatcagatgtgtttgggagttacaataatgttgttgcagGCTAACAGAGGGCTTGGACTCTCTGCCCATATTATCGATCACTGTAATCTTATCCTCAAGTTCCCTGAAGGCACTAACAGTACTTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352782343|gb|FQ470246.1|FQ470246EST: TCAACATTCAGATTTTATCGGATTTCCAGTCCAGTGTTCAGCAATGCATG GCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTG
genomic: TCAACATTCAGATTTTATCGGATTTCCAGTCCAGTGTTCAGCAATGCATGgttagtcttc ... ctttgtgcagGCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttctagttagtctttggttcatattgtgggctaaacttggaaactttgtgcagGCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGG
ggctaaa putative branch site (score: 3)
ttcatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgagactctgtgaatatagggtttcagtttatttgttgaagtgcactttctagttagtctttggttcatattgtgggctaaacttggaaactttgtgcagGCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- -gactctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtggg