Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgctgctgctaccacccgtctctcagtatcatctgtatttctcattttcactcaggctatgtttggttacggaaaatttgcgagaaaatgaaatgttggggacaaatggggaaaggcctaattctagatggatgagttgatgagtggtttcttggttccaatattggcttatttgattccagGTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTTCTGCACTTGCATAAGCCTGGCAAGCGTTGGCCTTGTTCTTACCATAACT

Basic information

species Vitis vinifera
transcript Vv14s0068g01020.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G07350.1 (Glycine max), 3'ss of exon 2
gtaagctgctgctgctaccacccgtctctcagtatcatctgtatttctcattttcactcaggctatgtttggttacggaaaatttgcgagaaaatgaaatgttggggacaaatggggaa---aggcctaattctagatggatgagttgatgagtggtttcttggttccaa-tattggct-tatttgattccagGTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTTCTGCACTTGCATAAGCCTGGCAAGCGTTGGCCTTGTTCTTACCATAACT
                                                                                            ||||     ||| |  ||| |    |    |  |||   |     |   |  |||  | |     |  || |||  || || | ||| | ||   || |||||||||||| ||||||||||||||| |||| ||||||||| |  | || || ||||||||||| ||| ||||||| || |  ||||| ||||||||||| 
--------------------------------------------------------------------------------------------aatgcttccttgtgagcaagttaaaacgttaaacctctcttcccctttttatgttt-tcatcacctatttagttgaaactaatagctattttcccttgcagGTTTGAAGGAATGATGGTTCCAAGCAGAGGTCAAGCAGCACTATTAACTTTTTGCACTTGCATCAGCTTGGCAAGTGTGGCACTTGTGCTTACCATAACC

upper sequence: Vv14s0068g01020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G26340.1 (Glycine max), 3'ss of exon 2
gtaagctgctgctgctaccacccgtctctcagtatcatctgtatttctcattttcactcaggctatgtttggttacggaaaatttgcgagaaaatgaaatgttggggacaaatggggaaaggcctaattctagatggatgagttgatgagtggtttc-ttggttccaatattggcttatttgattccagGTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTTCTGCACTTGCATAAGCCTGGCAAGCGTTGGCCTTGTTCTTACCATAACT
                                                                                   || |  | |||||     ||| |  ||| |    |||    |||  | || |   |   || || | |  |||  |||   | ||||     ||      || |||||||||||| ||||||||||||||| |||| ||||||||  |  | || || ||||||||||| ||| ||||||| || |  ||||| ||||||||||| 
----------------------------------------------------------------------------------cttcctcgcaaatgcttccttgtgagcaagtt---aaaatgttaaacccagtttattt--ttcatcactaatttagttgaagctaatagctattttacc--ttgcagGTTTGAAGGAATGATGGTTCCAAGCAGAGGTCAAGCAGCGCTATTAACTTTTTGCACTTGCATCAGCTTGGCAAGTGTGGCACTTGTGCTTACCATAACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349819952|gb|FQ404674.1|FQ404674
EST:     TTCTTTAGTCGCAACAATTTTGTGGTGTCGGATAGAGGAGAGACCATAAC                         GTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTT
genomic: TTCTTTAGTCGCAACAATTTTGTGGTGTCGGATAGAGGAGAGACCATAACgtaagctgct ... ttgattccagGTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTT
EST: gi|110391819|gb|EC956821.1|EC956821
EST:     TTCTTTACTCGCAACAATTTTGTGGTGTCGGATAGAGGAGAGACCATAAC                         GTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTT
genomic: TTCTTTAGTCGCAACAATTTTGTGGTGTCGGATAGAGGAGAGACCATAACgtaagctgct ... ttgattccagGTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTT
EST: gi|26258582|gb|CA809645.1|CA809645
EST:     TTCTTTACTCGCAACAATTTTGTGGTGTCGGATAGAGGAGAGACCATAAC                         GTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTT
genomic: TTCTTTAGTCGCAACAATTTTGTGGTGTCGGATAGAGGAGAGACCATAACgtaagctgct ... ttgattccagGTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTT
EST: gi|26257822|gb|CA808885.1|CA808885
EST:     TTCTTTACTCGCAACAATTTTGTGGTGTCGGATAGAGGAGAGACCATAAC                         GTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTT
genomic: TTCTTTAGTCGCAACAATTTTGTGGTGTCGGATAGAGGAGAGACCATAACgtaagctgct ... ttgattccagGTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTT
EST: gi|349823416|gb|FQ423227.1|FQ423227
EST:     TTCTTTAGTCGCAACAATTTTGTGGTGTCGGATAGAGGAGAGACCATAAC                         GTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTT
genomic: TTCTTTAGTCGCAACAATTTTGTGGTGTCGGATAGAGGAGAGACCATAACgtaagctgct ... ttgattccagGTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggatgagttgatgagtggtttcttggttccaatattggcttatttgattccagGTTTGAAGGCATGATGGTTCCAAGCCGAGGCCAAGCAGCATTGCTCACCTTCTGCACTTGCATAAGCCTGGCAAGCGTTGGCCTTGTTCTTACCATAACT
                                           atttgat  putative branch site (score: 5)
                                        cttattt  CT-rich tract
                                         ttatttgatt  TA-rich tract