1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttggagaattgagtaggaaagtgtagcatcaattagataaaatggacatgagattgttcactggaagtagaaaatgacaaaaaataaattaatttttcagTTCCGCGGTGGGCCAATCTCAGTAGCTGAGTACATGGAAGAAGTTTTGACAAACCCAAAGGCTGGATTCTATATTAACCGGGATGTGTTTGGAACAGAAG
species | Vitis vinifera |
transcript | Vv14s0066g02600.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAC-CTCCTCCGATTCCGAGCTCATTAAGCACCTGAAAGGCATTATCAAG TTCCGCGGTGGGCCAATCTCAGTAGCTGAGTACATGGAAGAAGTTTTGACA
genomic: AACACTCCTCGGATTCCGAGCTCGTTAAGCACCTGAAAGGCATTATCAAGgttgtacaat ... aatttttcagTTCCGCGGTGGGCCAATCTCAGTAGCTGAGTACATGGAAGAAGTTTTGACA
acatgagattgttcactggaagtagaaaatgacaaaaaataaattaatttttcagTTCCGCGGTGGGCCAATCTCAGTAGCTGAGTACATGGAAGAAGTTTTGACAAACCCAAAGGCTGGATTCTATATTAACCGGGATGTGTTTGGAACAGAAG
aattaat putative branch site (score: 3)
tttttc CT-rich tract
aagtagaaaatgacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggagaattgagtaggaaagtgtagcatcaattagataaaatggacatgagattgttcactggaagtagaaaatgacaaaaaataaattaatttttcagTTCCGCGGTGGGCCAATCTCAGTAGCTGAGTACATGGAAGAAGTTTTGACAAACCCAAAGGCTGGATTCTATATTAACCGGGATGTGTTTGGAACAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - aggaaag
- - - - - - - - - - - - -gcatcaa
- - - - - - - - - - - - - - - - - -gataaaa
- - - - - - - - - - - - - - - - - - - - - - - catgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat