1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtctctgtctcactctctctagcaactcttgtatttttttttgttctttggttaattgggtatctgaattttgtaaatatcttttgcttttgtagGTCTCGGCCAATGATGAAGAATTCGGCGTACAG
species | Vitis vinifera |
transcript | Vv14s0066g01790.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAAATCCTGCTCCTCCTTCTTGCCTCTTATCTTTTAGTTACAAAAAGG GTCTCGGCCAATGATGAAGAATTCGGCGTACAGEST: gi|110688487|gb|EE067095.1|EE067095
genomic: TGAAAATCCTGCTCCTCCTTCTTGCCTCTTATCTTTTAGTTACAAAAAGGgtctctgtct ... gcttttgtagGTCTCGGCCAATGATGAAGAATTCGGCGTACAG
EST: TGAAAATCCTGCTCCTCCTTCTTGCCTCTTACCTTTTAGTTACAAAAAGG GTCTCGGCCAATGATGAAGAATTCGGCGTACAGEST: gi|110710595|gb|EE087096.1|EE087096
genomic: TGAAAATCCTGCTCCTCCTTCTTGCCTCTTATCTTTTAGTTACAAAAAGGgtctctgtct ... gcttttgtagGTCTCGGCCAATGATGAAGAATTCGGCGTACAG
EST: CTCCTCCTTCTTGCCTCTTACCTTTTAGTTACAAAAAGG GTCTCGGCCAATGATGAAGAATTCGGCGTACAGEST: gi|110686807|gb|EE064863.1|EE064863
genomic: CTCCTCCTTCTTGCCTCTTATCTTTTAGTTACAAAAAGGgtctctgtct ... gcttttgtagGTCTCGGCCAATGATGAAGAATTCGGCGTACAG
EST: CTCCTCCTTCTTGCCTCTTATCTTTTAGTTACAAAAAGG GTCTCGGCCAATGATGAAGAATTCGGCGTACAG
genomic: CTCCTCCTTCTTGCCTCTTATCTTTTAGTTACAAAAAGGgtctctgtct ... gcttttgtagGTCTCGGCCAATGATGAAGAATTCGGCGTACAG
ttgttctttggttaattgggtatctgaattttgtaaatatcttttgcttttgtagGTCTCGGCCAATGATGAAGAATTCGGCGTACAG
ggttaat putative branch site (score: 4)
tatcttttgctttt putative PPT
tgaattttgtaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctgtctcactctctctagcaactcttgtatttttttttgttctttggttaattgggtatctgaattttgtaaatatcttttgcttttgtagGTCTCGGCCAATGATGAAGAATTCGGCGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA