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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaactagtactgaatctactgatagtgggattatcttttattcaactccctgaccttaaccaatcttctgatctgcagGGAAATCCTGAGGTGGGTCTTGTCCAGGCTCGGTGGTCTTTTGTGAACAAGGATGAGAATCTACTCACTAGGCTCCAGAACATCAATCTGTGCTTCCATT

Basic information

species Vitis vinifera
transcript Vv14s0066g01730.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01730.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G01560.1 (Glycine max), 3'ss of exon 2
------------------gtattaactagtactgaatctactgatagtgggattatcttttattcaactccctgac--cttaaccaatcttctgatctgcagGGAAATCCTGAGGTGGGTCTTGTCCAGGCTCGGTGGTCTTTTGTGAACAAGGATGAGAATCTACTCACTAGGCTCCAGAACATCAATCTGTGCTTCCATT
                   ||   || ||       ||| ||     |||  | |  |   |  ||| |   |||    || |   |  ||    | | |||||||| |||||  |||| || ||||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||
actaatactatatgccagataaggacaagggacatgtcttctatgcatggtctaaagtcaaaaacaaataattgaagaatttatggacttttc--tttacagGGAAAACCTGATTTGGGGCTGGTCCAGGCTAGATGGTCCTTTGTGAACAAGGATGAGAATCTACTCACAAGGCTCCAGAACATCAATTTGTGCTTTCATT

upper sequence: Vv14s0066g01730.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G04480.1 (Glycine max), 3'ss of exon 2
------------------------gtattaactagtactgaatctactgatagtgggattatcttttattcaactccctgacc--ttaaccaatc-----ttctgatctgcagGGAAATCCTGAGGTGGGTCTTGTCCAGGCTCGGTGGTCTTTTGTGAACAAGGATGAGAATCTACTCACTAGGCTCCAGAACATCAATCTGTGCTTCCATT
                         ||   || |||      | | ||     |||  | |  | | |  ||| |   |||    || |  | |       | |  | | |||||||| |||||  |||| || ||||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||||  ||||||| || |
gtaggttctaacactttaagccagataaggacaagttacatgttttctatgtatggtttaaagtctaaaacaaataattgaagaatttattatttatggacttttctttacagGGAAAACCTGACTTGGGCCTGGTCCAGGCTAGATGGTCCTTTGTGAACAAGGATGAGAATCTACTCACGAGGCTCCAGAACATCAACTTGTGCTTTCACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgggattatcttttattcaactccctgaccttaaccaatcttctgatctgcagGGAAATCCTGAGGTGGGTCTTGTCCAGGCTCGGTGGTCTTTTGTGAACAAGGATGAGAATCTACTCACTAGGCTCCAGAACATCAATCTGTGCTTCCATT
                                          ttctgat  putative branch site (score: 3)
                                        tcttct  CT-rich tract
      attatcttttattcaa  TA-rich tract