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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttacacatattcactatctgattcctgttccaacatcatgagaaatctattcacggagagtttgatagagttgttgttgatggactgagcctttgagaatgtttcttttgcagTTGGATGGGAAGATCATTGCTCCTAGAAGCTCCAGTGCTTGGGGATCAGGGTTCTATCAGTGGCTCGATTTCTCTAAGCTTCAAGGGATTACGATACGTG

Basic information

species Vitis vinifera
transcript Vv14s0066g01060.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161716872|gb|FC068800.1|FC068800
EST:     AACCGATAACTTTCTCGGGCCCTAACTGCGAACCAAACATTGTATTTCAG                         TTGGATGGGAAGATCATTGCTCCTAGAAGCTCCAGTGCTTGGGGATCAGGG
genomic: AACCGATAACTTTCTCGGGCCCTAACTGCGAACCAAACATTGTATTTCAGgtgagttaca ... tcttttgcagTTGGATGGGAAGATCATTGCTCCTAGAAGCTCCAGTGCTTGGGGATCAGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttgatagagttgttgttgatggactgagcctttgagaatgtttcttttgcagTTGGATGGGAAGATCATTGCTCCTAGAAGCTCCAGTGCTTGGGGATCAGGGTTCTATCAGTGGCTCGATTTCTCTAAGCTTCAAGGGATTACGATACGTG
                tgttgat  putative branch site (score: 4)
                                         tgtttctttt  putative PPT
                                           tttctttt  TA-rich tract