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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtcttctcacaaattttgagagcaaaacttgaaggttttctatacttaattcttttgttctgtccattttctgttgacaatttttttgtggtagGAAATGGAAGCAACAGTGGTCGATGGAAATGGAACTGAGACAGGGCATATTATTGTAACAACTATAGGTGGTAGAAATGGTCAACCCAAACAG

Basic information

species Vitis vinifera
transcript Vv14s0066g01050.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71869142|gb|DT018197.1|DT018197
EST:     TGCCGGAAGAAATCAATGAAATGAAGATCAGGGATGACAAGGTTGAAAAG                         GAAATGGAAGCAACAGTGGTCGATGGAAATGGAACTGAGACAGGGCATATT
genomic: TGCCGGAAGAAATCAATGAAATGAAGATCAGGGATGACAAGGTTGAAAAGgttgtcttct ... tttgtggtagGAAATGGAAGCAACAGTGGTCGATGGAAATGGAACTGAGACAGGGCATATT
EST: gi|77580371|gb|DV219072.1|DV219072
EST:     TGCCGGAAGAAATCAATGAAATGAAGATCAGGGATGACAAGGTTGAAAAG                         GAAATGGAAGCAACAGTGGTCGATGGAAATGGAACTGAGACAGGGCATATT
genomic: TGCCGGAAGAAATCAATGAAATGAAGATCAGGGATGACAAGGTTGAAAAGgttgtcttct ... tttgtggtagGAAATGGAAGCAACAGTGGTCGATGGAAATGGAACTGAGACAGGGCATATT
EST: gi|71870999|gb|DT020054.1|DT020054
EST:     TGCCGGAAGAAATCAATGAAATGAAGATCAGGGATGACAAGGTTGAAAAG                         GAAATGGAAGCAACAGTGGTCGATGGAAATGGAACTGAGACAGGGCATATT
genomic: TGCCGGAAGAAATCAATGAAATGAAGATCAGGGATGACAAGGTTGAAAAGgttgtcttct ... tttgtggtagGAAATGGAAGCAACAGTGGTCGATGGAAATGGAACTGAGACAGGGCATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatacttaattcttttgttctgtccattttctgttgacaatttttttgtggtagGAAATGGAAGCAACAGTGGTCGATGGAAATGGAACTGAGACAGGGCATATTATTGTAACAACTATAGGTGGTAGAAATGGTCAACCCAAACAG
                                tgttgac  putative branch site (score: 3)
                                         tttttttgt  putative PPT
      ttaattcttttgtt  TA-rich tract