Sequence
atgc intronic sequence ATGC exonic sequence...acatcttacaatagaagatgcttctgaatatgattatcaatttcctgattcgagttttactttatgaagttgtgcagaaacttaaattttactttaccagTATCATGTAGGATATCAAGAGCAAATGTCACATTGGCCTCAGCAACCAGTTAATATTATCATAAAATGGCTAAAGGATCACAGCCCTTCTTTGATTGTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g00390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os02g38060.1 (Oryza sativa), 3'ss of exon 3
acatcttacaatagaagatgcttctgaatatgattatcaatttcctgattcgagttttactttatgaagttgtgcagaaacttaaattt-tactttaccagTATCATGTAGGATATCAAGAGCAAATGTCACATTGGCCTCAGCAACCAGTTAATATTATCATAAAATGGCTAAAGGATCACAGCCCTTCTTTGATTGTGG
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agcgatcgatatgcagggactttttgcattgcagcaataattgcccc-tatggttcataccacctgatatatggctgagatttcactttgttttcttttagTATCATGCAGGATATCGAGAGCAAATGTCGCATTGGCCAGAGCAACCAGTAAATGTTATAATCAATTGGTTGAAGAGTCATAGTGCATCTTGGACAGTTG
upper sequence: Vv14s0066g00390.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM5G876003_T03 (Zea mays), 3'ss of exon 3
acatcttacaatagaagatgcttctgaatatgat-tatcaatttcctgattcgagttttactttatgaagttgtgcagaaacttaaattttactttaccagTATCATGTAGGATATCAAGAGCAAATGTCACATTGGCCTCAGCAACCAGTTAATATTATCATAAAATGGCTAAAGGATCACAGCCCTTCTTTGATTGTGG
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-agtagcgtcgccgcatttgctgggggaaggcatgcgtctgtttacccccttcagcattgggtctgtcatacatgcttgaattcacgtttctctcttttagTATCATACAGGATATCAAGAGCAGATGTCACACTGGCCTGAACAGCCAGTGAATGTAATAATCAATTGGTTGAAGAGTCAGAATGCGTCATGGACTGTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71859017|gb|DT008072.1|DT008072EST: GAAGCGAGGCGCTTAGCTATTTTGAAGAAGACCCTGCGTTATTTAATGTG TATCATGTAGGATATCAAGAGCAAATGTCACATTGGCCTCAGCAACCAGTT
genomic: GAAGCGAGGCGCTTAGCTATTTTGAAGAAGACCCTGCGTTATTTAATGTGgtaagattca ... actttaccagTATCATGTAGGATATCAAGAGCAAATGTCACATTGGCCTCAGCAACCAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattcgagttttactttatgaagttgtgcagaaacttaaattttactttaccagTATCATGTAGGATATCAAGAGCAAATGTCACATTGGCCTCAGCAACCAGTTAATATTATCATAAAATGGCTAAAGGATCACAGCCCTTCTTTGATTGTGG
tcctgat putative branch site (score: 3)
ttttacttt putative PPT
agaaacttaaatttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acatcttacaatagaagatgcttctgaatatgattatcaatttcctgattcgagttttactttatgaagttgtgcagaaacttaaattttactttaccagTATCATGTAGGATATCAAGAGCAAATGTCACATTGGCCTCAGCAACCAGTTAATATTATCATAAAATGGCTAAAGGATCACAGCCCTTCTTTGATTGTGG
- - - - -aatagaa
- - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - -ttcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaaac