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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcaataatttttctgtgtagaatatttctgagcaattagaaatctttgagaattgcgattgaatctggtgcactaatttctgaaatgggcatatacccagtacctaataagctttgtatgaccagTTCATTGGCGCTTGCAAGGAACCTGTCATGGTAATAGTTACTGAGCTTCTATTAGGTGGGACATTACGAAAATACCTGCTGAACCTGCGGCCAAGGTGCT

Basic information

species Vitis vinifera
transcript Vv14s0066g00370.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G27560.1 (Arabidopsis thaliana), 3'ss of exon 2
gtagtcaataatttttctgtgtagaatatttctgagcaattagaaatctttgagaattgc-gattgaatctggtgcactaatttctgaa-atgggcatatacccagtacctaataa-gctttgtatgaccagTTCATTGGCGCTTGCAAGGAACCTGTCATGGTAATAGTTACTGAGCTTCTATTAGGTGGGACATTACGAAAATACCTGCTGAACCTGCGGCCAAGGTGCT
                                       ||   ||| |||   |    |  | |   |    |   |||||    ||  || ||  | ||  ||  | |   |     |||||||    |||||||||| || ||||| |||||  | ||||| |||||||||||||||||| |||| || ||||| || ||||| ||  | | | | ||||||| | | |
-------------------------------------gtttttcaattttttctatccaccaactctgttcatttggctaatcagagagtattgggttgtaatcaacaacgtttggtaatttgtat----agTTCATTGGAGCGTGCAAAGAACCCATGATGGTTATAGTTACTGAGCTTCTACTAGGCGGTACATTGCGTAAATATCTAGTCAGCTTACGGCCAAAGCGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactaatttctgaaatgggcatatacccagtacctaataagctttgtatgaccagTTCATTGGCGCTTGCAAGGAACCTGTCATGGTAATAGTTACTGAGCTTCTATTAGGTGGGACATTACGAAAATACCTGCTGAACCTGCGGCCAAGGTGCT
                                  taataa  TA-rich tract