Sequence
atgc intronic sequence ATGC exonic sequencegtaaattttgtatctatattttggaagttctgtgtttgtatcaggagatactaaattgattaagtaatggagtgttgatttatctcagGCAAGACAAGGCAAAGGCTGTAGAGATATTAGTGACAGATTTAAGGGTGTTCTCAACTTTCAATGAAGACTTGTATAAAGAAATCACTCAGCTTTTGACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 2
------------gtaaattttgtatctatattttggaagt-tctgtgtttgtatcaggagatactaaattgattaagtaatggagtgttgatttatctcagGCAAGACAAGGCAAAGGCTGTAGAGATATTAGTGACAGATTTAAGGGTGTTCTCAACTTTCAATGAAGACTTGTATAAAGAAATCACTCAGCTTTTGACC
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gtatctattaatttgaatctcttttggattttctaattttgtttgtgcttatgatggtacttcacatgttgtttttgtctttg-gtgctgttaaattttagGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACCCAGCTGTTAACT
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G29090.1 (Glycine max), 3'ss of exon 2
--------------gtaaattttgtatctatattttggaagttctgtgtttgtatcaggagatactaaattgattaagtaatggagtgttgatttatctcagGCAAGACAAGGCAAAGGCTGTAGAGATATTAGTGACAGATTTAAGGGTGTTCTCAACTTTCAATGAAGACTTGTATAAAGAAATCACTCAGCTTTTGACC
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gtatgcggaactttgtatcttttttaattttttttcgaaacatgtttgcacttgt-atgaaatttcacattgttttgtctctggtgtttttcaaaatttaagGCAAGACAAGGCAAAGGCTGTGGAGATATTAGTGGGTGATTTAAAGATGTTTTCCACCTTCAATGAGGAGCTGTACAAAGAAATAACCCAGTTATTAACT
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G38230.1 (Glycine max), 3'ss of exon 2
--------------gtaaattttgtatctatattttggaagt-tctgtgtttgtatcaggagatactaaattgattaagtaatggagtgttgatttatctcagGCAAGACAAGGCAAAGGCTGTAGAGATATTAGTGACAGATTTAAGGGTGTTCTCAACTTTCAATGAAGACTTGTATAAAGAAATCACTCAGCTTTTGACC
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gtatgcggaactttgttatctttttaactattttttctaaacatgtttgcgcttgttatgaaatttcacattgttttgtctctggtgttttt-caaattttagGCAAGACAAGGCAAAGGCCGTGGAGATATTAGTGGGTGATTTGAAAATGTTCTCCACCTTCAATGAGGAGCTATACAAAGAAATAACCCAGTTATTAACT
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G39290.1 (Glycine max), 3'ss of exon 3
------gtaaattt---tgtatctatattttggaagttctgtgtttgtatcaggagatactaaattgattaagtaatggagtgttgatttatctcagGCAAGACAAGGCAAAGGCTGTAGAGATATTAGTGACAGATTTAAGGGTGTTCTCAACTTTCAATGAAGACTTGTATAAAGAAATCACTCAGCTTTTGACC
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gtatctattaatttgaatctatttgggattttctaattgtttttgtgcttatggtggtacttcacatgttttatctttg-gtgctcttctattttagGCAAGACAAAGCAAAGGCTGTTGAGATATTGGTGGGTGATTTAAAAGTTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACCCAGCTGTTAACT
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaaattttgtatctatattttggaagttctgtgtttgtatcaggagatactaaattgattaagtaatggagtgttgatttatctcagGCAAGACAAGGCAAAGGCTGTAGAGATATTAGTGACAGATTTAAGGGTGTTCTCAACTTTCAATGAAGACTTGTATAAAGAAATCACTCAGCTTTTGACC
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-----gtatgattataagctgtcttatttgtttttttactcttgaagatttgtggtt--ttagagtttgatgttctctgttgttacagGCAAGAGAAGGCAAAAGCAGTTGAGATACTAGTGCAAGATTTGAGAGTTTTCTCCACTTTCAATGAGGAGCTTTACAAAGAAATCACTCAACTCTTAACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttgtatcaggagatactaaattgattaagtaatggagtgttgatttatctcagGCAAGACAAGGCAAAGGCTGTAGAGATATTAGTGACAGATTTAAGGGTGTTCTCAACTTTCAATGAAGACTTGTATAAAGAAATCACTCAGCTTTTGACC
tttatctc CT-rich tract
atactaaattgattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaattttgtatctatattttggaagttctgtgtttgtatcaggagatactaaattgattaagtaatggagtgttgatttatctcagGCAAGACAAGGCAAAGGCTGTAGAGATATTAGTGACAGATTTAAGGGTGTTCTCAACTTTCAATGAAGACTTGTATAAAGAAATCACTCAGCTTTTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT