1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttacacaacatgcattgcttttcccccactcatatatgttcaatactggcattgatgattggtttcacctgatgttatggaccttgtggtctttttcagGTTATTGCCGACAATGTGGGTGACAATGTAGGAGACATTGCTGGGATGGGGTCTGACCTGTTCGGGTCTTACGCTGAAGCATCCTGTGCTGCTCTCTTTG
species | Vitis vinifera |
transcript | Vv14s0060g01280.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGAAAAGANGAACGAAATATCCCTGAAGATGATCCACGAAACCCAGCT GTTATTGCCGACAATGTGGGTGACNATGTAGGAGACATTGCTGGGATGGGGEST: gi|110698962|gb|EE077060.1|EE077060
genomic: TTGGAAAAGTTGAACGAAATATCCCTGAAGATGATCCACGAAACCCAGCTgtaatttctg ... tctttttcagGTTATTGCCGACAATGTGGGTGACAATGTAGGAGACATTGCTGGGATGGGG
EST: TTGGAAAAGTTGAACCAAATATCCCTGAAGATGATCCACCAAACCCAGCT GTTATTGCCGACAATGGGGGTGACCATGTAGGAGACATTGCTTGGATGGGGEST: gi|30304144|gb|CB980938.1|CB980938
genomic: TTGGAAAAGTTGAACGAAATATCCCTGAAGATGATCCACGAAACCCAGCTgtaatttctg ... tctttttcagGTTATTGCCGACAATGTGGGTGACAATGTAGGAGACATTGCTGGGATGGGG
EST: TTGGAAAAGTTGAACGAAATATCCCTGAAGATGATCCACGAAACCCAGCT GTTATTGCCGACAATGTGGGTGACAATGTGAGGAN-CATTGCTGGGATGGG
genomic: TTGGAAAAGTTGAACGAAATATCCCTGAAGATGATCCACGAAACCCAGCTgtaatttctg ... tctttttcagGTTATTGCCGACAATGTGGGTGACAATGT-AGGAGACATTGCTGGGATGGG
actggcattgatgattggtttcacctgatgttatggaccttgtggtctttttcagGTTATTGCCGACAATGTGGGTGACAATGTAGGAGACATTGCTGGGATGGGGTCTGACCTGTTCGGGTCTTACGCTGAAGCATCCTGTGCTGCTCTCTTTG
acctgat putative branch site (score: 4)
tctttttc putative PPT
atgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttacacaacatgcattgcttttcccccactcatatatgttcaatactggcattgatgattggtttcacctgatgttatggaccttgtggtctttttcagGTTATTGCCGACAATGTGGGTGACAATGTAGGAGACATTGCTGGGATGGGGTCTGACCTGTTCGGGTCTTACGCTGAAGCATCCTGTGCTGCTCTCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - acatgca
- - - - - - - - - - - -cccccac
- - - - - - - - - - - - - - - - - - - - - -atactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgtg