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gtatgtgagggactggtctaatgcttctgtttcttcgtgttactgttccttgtcttttgcctgcacttaattgattattgatcatttgcattggttactgaagacagttcttgatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAATTGTGACGACTATTGGTGGTAGAAATGGCCAACCAAAGCAG
species | Vitis vinifera |
transcript | Vv14s0060g00600.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAEST: gi|71858122|gb|DT007177.1|DT007177
genomic: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAEST: gi|161718942|gb|FC067353.1|FC067353
genomic: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACGGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAEST: gi|30256245|gb|CB972088.1|CB972088
genomic: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACGGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAEST: gi|110689423|gb|EE065633.1|EE065633
genomic: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACAGTTGTTGACGGTAATGGTACAGAGACAGGTCATATAEST: gi|30327244|gb|CD010506.1|CD010506
genomic: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: GAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACGGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAEST: gi|161713248|gb|FC063076.1|FC063076
genomic: GAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAEST: gi|161718839|gb|FC065074.1|FC065074
genomic: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAEST: gi|33405711|gb|CF211338.1|CF211338
genomic: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAEST: gi|110687881|gb|EE065793.1|EE065793
genomic: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAEST: gi|30325747|gb|CD009009.1|CD009009
genomic: TTGATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: GAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACGGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAEST: gi|30325454|gb|CD008716.1|CD008716
genomic: GAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: GAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACGGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAEST: gi|71859213|gb|DT008268.1|DT008268
genomic: GAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: ATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACGGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAEST: gi|30323811|gb|CD007073.1|CD007073
genomic: ATAGGTTGCCAGAAGAGATGAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
EST: GAATGACATGAAAATTAGGGATGACAAA GAGATGGAAGCAACGGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
genomic: GAATGACATGAAAATTAGGGATGACAAAgtatgtgagg ... gatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATA
taattgattattgatcatttgcattggttactgaagacagttcttgatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAATTGTGACGACTATTGGTGGTAGAAATGGCCAACCAAAGCAG
tttttc CT-rich tract
attattgatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgagggactggtctaatgcttctgtttcttcgtgttactgttccttgtcttttgcctgcacttaattgattattgatcatttgcattggttactgaagacagttcttgatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAATTGTGACGACTATTGGTGGTAGAAATGGCCAACCAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG