Sequence
atgc intronic sequence ATGC exonic sequencegtgagtttaaacatcgctccgttgtgtttccgactttgttatgatttcttatttattcctctggtgagttcttctagagtttaacttctaaacttattttcttcagGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g00460.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G38800.1 (Glycine max), 3'ss of exon 1
gtgagtttaa--acatcgctccgttgtgt-ttccgactttgtta-tgatttcttatttattcctctggtg----agttcttctagagtttaacttctaaacttattttctt--cagGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACC
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gtgagcttcagtacagtgcccaattatccattatagttaccttagctgctttgtttttattcctctctagtctctattcggctaaaattcaactcctaagttttttgttttagcagAGGTCAAGCAGAGAAAGAATTTAGAGTAGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACTTGGTTCGACTTTTGGGGTACTGCATTGAGGGAACT
upper sequence: Vv14s0060g00460.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G22550.1 (Glycine max), 3'ss of exon 1
gtgagtttaa--acatcgctcc--gttgtgtttccgactttgttatgatttcttatttatt---cctctggtgagttctt-ctagagtttaacttctaaacttattttcttcagGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACC
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gtgagttccagtacaatgtctcaggctttgagtttacactaattattgttttttgtttctcttacttctgctaaactttgactagtttttatttccacccctccttttctgcagTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGTCATGTCCGACATAAAAACTTGGTTCGACTTTTGGGGTACTGCATTGAGGGGACT
upper sequence: Vv14s0060g00460.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G28490.1 (Glycine max), 3'ss of exon 1
gtgagtttaaacatcgctccgttgtgtttccgactttg--ttat-gatttcttatttatt-------cctctggtgagttcttctagagtttaacttctaaactt--attttcttcagGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACC
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gtgagttccagggggggggcctaaggctttgaatttggggttattgttttgttttttatttctcttacttctgccaaactttgactggtttttatttccacccctcctttttctgcagTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACATAAAAACTTGGTTCGACTTTTGGGTTACTGCATTGAGGGGACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719711|gb|FC065745.1|FC065745EST: CAGTTGATCAATGGGACGCCAGTGGCAGTTAAAAAGATCCTCAACAACCT GGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGT
genomic: CAGTTGATCAATGGGACGCCAGTGGCAGTTAAAAAGATCCTCAACAACCTgtgagtttaa ... ttttcttcagGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttattcctctggtgagttcttctagagtttaacttctaaacttattttcttcagGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACC
ttctaaa putative branch site (score: 2)
cttattttcttc CT-rich tract
tttaacttctaaactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtttaaacatcgctccgttgtgtttccgactttgttatgatttcttatttattcctctggtgagttcttctagagtttaacttctaaacttattttcttcagGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG