Sequence
atgc intronic sequence ATGC exonic sequence...gattccttttttttttcttggaaggaaaaaaactgctagaattatttacactggtatcatatttaatggtatttaatgactatactttcgacacttgcagTTTTACTTTCAAAATGGCCGCCCACCTCCAAATGAACTAAAGGAACAATGTTTGTTTAGGATCAATCAAGTTTTCTATGATCACTTGGATGGACTGCAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0036g00730.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G36530.1 (Glycine max), 3'ss of exon 2
gattcctttttt--ttttcttggaaggaaaaaaactgctagaattatttac-actggtatcatatttaatggtatttaatgactatactttcgacacttgcagTTTTACTTTCAAAATGGCCGCCCACCTCCAAATGAACTAAAGGAACAATGTTTGTTTAGGATCAATCAAGTTTTCTATGATCACTTGGATGGACTGCAAA
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tatcctgtatctggttctctttgtgtgtttatgctttcttttttctctcatgattcctgccatgtt-aatgtt-tataatataaatattttct-cacttgcagTTCTACTTTCAACATGGACGTCCACCTCCAAATGAACTGAAAGAAGAATGCTTGTTTAAAATTGATCGGCTATTCTATGATCATATGGATGGCATGCAGG
upper sequence: Vv14s0036g00730.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G30930.2 (Glycine max), 3'ss of exon 2
-----gattccttttttttttcttggaaggaaaaaaactgctagaattatttacactggtatcatatttaatggtatttaatgactatactttcgacacttgcagTTTTACTTTCAAAATGGCCGCCCACCTCCAAATGAACTAAAGGAACAATGTTTGTTTAGGATCAATCAAGTTTTCTATGATCACTTGGATGGACTGCAAA
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ttttatcttgtacctggttctcttgtgtgtttatgctttcttttttctcttgtgattcctgccatgttaa----tgtgtaatataaatattttct-cgcttgcagTTCTACTTTCAACATGGACCTCCACCTCCAAATGAACTGAAAGAAGAATGCTTGTTTAAAATTGATCGGTTATTCCATGATCATATGGATGGCATGCAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttacactggtatcatatttaatggtatttaatgactatactttcgacacttgcagTTTTACTTTCAAAATGGCCGCCCACCTCCAAATGAACTAAAGGAACAATGTTTGTTTAGGATCAATCAAGTTTTCTATGATCACTTGGATGGACTGCAAA
atttaat putative branch site (score: 4)
tatcatatttaatggt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gattccttttttttttcttggaaggaaaaaaactgctagaattatttacactggtatcatatttaatggtatttaatgactatactttcgacacttgcagTTTTACTTTCAAAATGGCCGCCCACCTCCAAATGAACTAAAGGAACAATGTTTGTTTAGGATCAATCAAGTTTTCTATGATCACTTGGATGGACTGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - ttcttgg
- - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - ctgctag