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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacagttgcgagattttatttttgatgtggatgattctttcaaacatgtttgtttgcattgcatatgcaagcagttgaatgaccaaattctttttggtagGCTGACAATTTGATAAAGGAGGAAGTTCAGTTTCTCCGTGTGGCAATGGGACATGATAACGAATCACTTGATGAATTTGTTGAGGCACACAAAACATGCT

Basic information

species Vitis vinifera
transcript Vv14s0036g00510.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351040301|gb|FQ425387.1|FQ425387
EST:     CTGGTTCTGTCCCTGACATAGAAGATTTTGAAGAAGCTGAACTAAAAGAG                         GCTGACAATTTGATAAAGGAGGAAGTTCAGTTTCTCCGTGTGGCAATGGGA
genomic: CTGGTTCTGTCCCTGACATAGAAGATTTTGAAGAAGCTGAACTAAAAGAGgtatatgcta ... tttttggtagGCTGACAATTTGATAAAGGAGGAAGTTCAGTTTCTCCGTGTGGCAATGGGA
EST: gi|351040760|gb|FQ438304.1|FQ438304
EST:     CTGGTTCTGTCCCTGACATAGAAGATTTTGAAGAAGCTGAACTAAAAGAG                         GCTGACAATTTGATAAAGGAGGAAGTTCAGTTTCTCCGTGTGGCAATGGGA
genomic: CTGGTTCTGTCCCTGACATAGAAGATTTTGAAGAAGCTGAACTAAAAGAGgtatatgcta ... tttttggtagGCTGACAATTTGATAAAGGAGGAAGTTCAGTTTCTCCGTGTGGCAATGGGA
EST: gi|161713451|gb|FC063729.1|FC063729
EST:     CTGGTTCTGTCCCTGACATAGAAGATTTTGAAGAAGCTGAACTAAAAGAG                         GCTGACAATTTGATAAAGGAAGAAGTTCAGTTTCTCTGTGTGGCAATGGGA
genomic: CTGGTTCTGTCCCTGACATAGAAGATTTTGAAGAAGCTGAACTAAAAGAGgtatatgcta ... tttttggtagGCTGACAATTTGATAAAGGAGGAAGTTCAGTTTCTCCGTGTGGCAATGGGA
EST: gi|351020080|gb|FQ445687.1|FQ445687
EST:     CTGGTTCTGTCCCTGACATAGAAGATTTTGAAGAAGCTGAACTAAAAGAG                         GCTGACAATTTGATAAAGGAGGAAGTTCAGTTTCTCCGTGTGGCAATGGGA
genomic: CTGGTTCTGTCCCTGACATAGAAGATTTTGAAGAAGCTGAACTAAAAGAGgtatatgcta ... tttttggtagGCTGACAATTTGATAAAGGAGGAAGTTCAGTTTCTCCGTGTGGCAATGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttgtttgcattgcatatgcaagcagttgaatgaccaaattctttttggtagGCTGACAATTTGATAAAGGAGGAAGTTCAGTTTCTCCGTGTGGCAATGGGACATGATAACGAATCACTTGATGAATTTGTTGAGGCACACAAAACATGCT
                                          ttcttttt  CT-rich tract
                                       aaattcttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gacagttgcgagattttatttttgatgtggatgattctttcaaacatgtttgtttgcattgcatatgcaagcagttgaatgaccaaattctttttggtagGCTGACAATTTGATAAAGGAGGAAGTTCAGTTTCTCCGTGTGGCAATGGGACATGATAACGAATCACTTGATGAATTTGTTGAGGCACACAAAACATGCT

- cagttgc
- - - - - - - - - - - - - gtggatg
- - - - - - - - - - - - - - - - - - - - caaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaccaaa