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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacacctccttaatttttgtctttctatggtttgttatcaattattttgattttttctgtaaaagttgtttgtgattcttatggatatcggatcttgaagGCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGTATTGTTGGTTTTGACCCTGCCACTGGCATGACAGTGAATGGTACACCTA

Basic information

species Vitis vinifera
transcript Vv14s0030g02020.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33404078|gb|CF209705.1|CF209705
EST:     ATACAGCAGATGGTTATGGACCCTTTACTAATGAAGTCTTGATCGGGAAG                         GCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGT
genomic: ATACAGCAGATGGTTATGGACCCTTTACTAATGAAGTCTTGATCGGGAAGgtaactgcaa ... gatcttgaagGCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgattttttctgtaaaagttgtttgtgattcttatggatatcggatcttgaagGCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGTATTGTTGGTTTTGACCCTGCCACTGGCATGACAGTGAATGGTACACCTA
 ttttgat  putative branch site (score: 4)
     ttttttctgtaaaa  TA-rich tract