1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aacacctccttaatttttgtctttctatggtttgttatcaattattttgattttttctgtaaaagttgtttgtgattcttatggatatcggatcttgaagGCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGTATTGCTGGTTTTGACCCTGCCACTGGCATGACAGTGAATGGTACACCTA
species | Vitis vinifera |
transcript | Vv14s0030g01980.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATACAGCAGATGTTTATGGACCCTTTACTAATGAAGTCTTGATCGGGAAG GCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGTEST: gi|161718812|gb|FC066644.1|FC066644
genomic: ATACAGCAGATGTTTATGGACCCTTTACTAATGAAGTCTTGATCGGGAAGgtaactgcaa ... gatcttgaagGCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGT
EST: ATACAGCAGATGTTTATGGACCCTTTACTAATGAAGTCTTGATCGGGAAG GCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGTEST: gi|71858830|gb|DT007885.1|DT007885
genomic: ATACAGCAGATGTTTATGGACCCTTTACTAATGAAGTCTTGATCGGGAAGgtaactgcaa ... gatcttgaagGCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGT
EST: ATACAGCAGATGTTTATGGACCCTTTACTAATGAAGTCTTGATCGGGAAG GCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGTEST: gi|161720068|gb|FC066724.1|FC066724
genomic: ATACAGCAGATGTTTATGGACCCTTTACTAATGAAGTCTTGATCGGGAAGgtaactgcaa ... gatcttgaagGCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGT
EST: ATACAGCAGATGTTTATGGACCCTTTACTAATGAAGTCTTGATCGGGAAG GCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGT
genomic: ATACAGCAGATGTTTATGGACCCTTTACTAATGAAGTCTTGATCGGGAAGgtaactgcaa ... gatcttgaagGCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGT
tttgattttttctgtaaaagttgtttgtgattcttatggatatcggatcttgaagGCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGTATTGCTGGTTTTGACCCTGCCACTGGCATGACAGTGAATGGTACACCTA
ttttgat putative branch site (score: 4)
ttttttctgtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacacctccttaatttttgtctttctatggtttgttatcaattattttgattttttctgtaaaagttgtttgtgattcttatggatatcggatcttgaagGCGTTAAAGGAGTTGCCTAGAGAAAAGATCCAGTTAGCCACCAAATTTGGTATTGCTGGTTTTGACCCTGCCACTGGCATGACAGTGAATGGTACACCTA
- - cctcctt
- - - - - - - - - - - - - -tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatgg