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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggattatatatgtaaagatatgttggatgtatctttggcatttatcatactttcaaacaaaacatgaattagtttttcagctaagtttgtttcaaaatggaattcccttggatgattttaattttggctttgctgattttccatcaggagaaaattggtttataaatggtttggtttgttcagGTAGATATATATGAGTCAAGGTCTTTCATTGGTGGAAAAGTGGGCTCTTTTGTTGATAGACGTGGAAATCACATTGAAATGGGACTGCACGTGTTCTTTG

Basic information

species Vitis vinifera
transcript Vv14s0030g01740.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G37170.1 (Glycine max), 3'ss of exon 2
gtttggattatatatgtaaagatatgttggatgtatctttggcatttatcatactttcaaacaaaacatgaattagtttttcagctaagtttgtttcaaaatggaattcccttggatgattttaattttggctttgctgatt-ttccatcaggagaaaattggtttataaatggtttggtttgttcagGTAGATATATATGAGTCAAGGTCTTTCATTGGTGGAAAAGTGGGCTCTTTTGTTGATAGACGTGGAAATCACATTGAAATGGGACTGCACGTGTTCTTTG
|||| | |  |   |     | |    |  |||      ||  || |     | ||| |||    |  |        | |  ||  |||||  |||  || |       |||| | |  | |   || |   |  | || |  || ||||||||    ||   |     ||||  ||   |  ||||||| |||||||||||||||||| |||| |||||||| ||||| || ||||||||||| | | |||| |||||||||||||||||| |||| || |||||||
gtttagctccttctttctctgtttgtattaatgagctactgatatcttaataattttgaaatcggatgttgtggtaatatatagtaaagttacttttgaattccttgatccttagttagtctgttttgttattcaggtgttgattgcatcaggatgttatgact-----aatgtattctatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTTGTTGACAAAGGTGGGAATCACATTGAAATGGGATTGCATGTTTTCTTTG

upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G30220.1 (Glycine max), 3'ss of exon 2
gtttggattatatatgtaaagatatgttggatgtatctttggcatttatcatactttcaaacaaaacatgaattagtttttcagctaagtttgtttcaaaatggaattcccttggatgatttta-attttggctttgctgattttccatcaggagaaaattggtttataaatggtttggtttgttcagGTAGATATATATGAGTCAAGGTCTTTCATTGGTGGAAAAGTGGGCTCTTTTGTTGATAGACGTGGAAATCACATTGAAATGGGACTGCACGTGTTCTTTG
                                                                                  |       |  || |   || |  ||   | |  || ||||| | ||  | | || ||  ||| ||| |||     ||   |     ||||  ||   |  ||||||| ||||| |||||||||||  |||| |||||||| ||||| |||||||||||||| | | |||| |||||||||||||||||| |||| || |||||||
-------------------------------------------------------------------------------gcaaaggggagtgattccttgatcg--ttgattagtttgtttttataattcaggtgtgttg--tttgcattagggtgttatgact-----aatgtattctatcattcagGTGGATATCTATGAGTCAAGACCTTTTATTGGTGGCAAAGTTGGCTCTTTTGTTGACAAAGGTGGGAATCACATTGAAATGGGATTGCATGTTTTCTTTG

upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G04870.2 (Arabidopsis thaliana), 3'ss of exon 3
gtttggattatatatgtaaagatatgttggatgtatctttggcatttatcatactttcaaacaaaacatgaattagtttttcagctaagtttgtttcaaaatggaattcccttggatgattttaattttggctttgctgattttccatcaggagaaaattggtttataaatggtttggtttgttcagGTAGATATATATGAGTCAAGGTCTTTCATTGGTGGAAAAGTGGGCTCTTTTGTTGATAGACGTGGAAATCACATTGAAATGGGACTGCACGTGTTCTTTG
                                                                                                                |  |    | |  | || | | |    || ||  ||  ||  | | |   | | |||      || ||  ||||||| ||||||||||| || ||| | ||||||||||| |||||||| |||||||| ||||||||||| || || |||||||||||| | || || ||||| |
-------------------------------------------------------------------------------------------------------------gtgtttactcctcttctgttagttgtttatatatttgatttggttaca-tacatgtgtaatcatcgtgattgtttcagGTGGATATATATGATTCGAGGACATTCATTGGTGGCAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTTTCTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgctgattttccatcaggagaaaattggtttataaatggtttggtttgttcagGTAGATATATATGAGTCAAGGTCTTTCATTGGTGGAAAAGTGGGCTCTTTTGTTGATAGACGTGGAAATCACATTGAAATGGGACTGCACGTGTTCTTTG
  tgctgat  putative branch site (score: 3)
                                              tttgttc  putative PPT
                      aaaattggtttataaa  TA-rich tract