1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatttaatattaattttgttgaggagggctgcagtctgaagcctacaaaggtggtttatggtagttatcatggtttcctttcgggtgattgttcaaccagTTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCATATAAAGGGGTTGAATGTGGAGATGGAGGTCCATTCGGTGCGGTTGTTGT
species | Vitis vinifera |
transcript | Vv14s0030g01610.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCTGGCCATCAGGAAG TTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCATEST: gi|110708135|gb|EE085328.1|EE085328
genomic: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCAGGCCATCAGGAAGgtaactgaat ... gttcaaccagTTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCAT
EST: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCTGGCCATCAGGAAG TTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCATEST: gi|110363177|gb|EC926749.1|EC926749
genomic: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCAGGCCATCAGGAAGgtaactgaat ... gttcaaccagTTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCAT
EST: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCTGGCCATCAGGAAG TTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCATEST: gi|110695405|gb|EE073382.1|EE073382
genomic: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCAGGCCATCAGGAAGgtaactgaat ... gttcaaccagTTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCAT
EST: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCTGGCCATCAGGAAG TTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCATEST: gi|110384122|gb|EC948538.1|EC948538
genomic: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCAGGCCATCAGGAAGgtaactgaat ... gttcaaccagTTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCAT
EST: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCTGGCCATCAGGAAG TTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCATEST: gi|110401148|gb|EC967744.1|EC967744
genomic: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCAGGCCATCAGGAAGgtaactgaat ... gttcaaccagTTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCAT
EST: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCTGGCCATCAGGAAG TTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCATEST: gi|26261545|gb|CA812608.1|CA812608
genomic: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCAGGCCATCAGGAAGgtaactgaat ... gttcaaccagTTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCAT
EST: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCTGGCCATCAGGAAG TTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCAT
genomic: AAAAGATGGAACCATTTCTGTAGCTTCTGCATTCGCAGGCCATCAGGAAGgtaactgaat ... gttcaaccagTTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCAT
caaaggtggtttatggtagttatcatggtttcctttcgggtgattgttcaaccagTTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCATATAAAGGGGTTGAATGTGGAGATGGAGGTCCATTCGGTGCGGTTGTTGT
tagttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttaatattaattttgttgaggagggctgcagtctgaagcctacaaaggtggtttatggtagttatcatggtttcctttcgggtgattgttcaaccagTTGTACAGGATAGAGACTACAAATTCTTAACAGCAGCAGTTGAGGAGGCATATAAAGGGGTTGAATGTGGAGATGGAGGTCCATTCGGTGCGGTTGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - -gggctgc
- - - - - - - - - - - - - - - - - - - - gcctaca
- - - - - - - - - - - - - - - - - - - - - - - - -ggtggtt