Sequence
atgc intronic sequence ATGC exonic sequence...tcccctttgctaggttactgttctgttgataattcttttactgttagaggatttataaattcttatgttactccattgtggaatgtttccctatttgcagCATTGTGCAGGCATAAATTGTTTGGCTGTATGGAAGCCATTGGCTCCTGATGGGCGTGATTACCTCTTCACTGGAAGCCGTGATGGCACGCTGAAGAGGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G42990.1 (Glycine max), 3'ss of exon 2
tcccctttgctaggttactgttctgttgataattcttttactgttagaggatttataaattcttatgtt---actccattgtggaatgtttccctatttgcagCATTGTGCAGGCATAAATTGTTTGGCTGTATGGAAGCCATTGGCTCCTGATGGGCGTGATTACCTCTTCACTGGAAGCCGTGATGGCACGCTGAAGAGGT
| ||| | | | || | ||| | | ||| | | || | ||| | | || || | || ||| || || | | |||||||||||||||||||||||||| ||||| || | | || |||||||| |||||| ||||||||||| ||||||||||| | | | || | |
tattttttcatcaatatttcttattttggt--tgatttcaattttgatagttttcttagttgcacagtctagaatcatatgtaagttggctcttt-tctgcagCATTGTGCAGGCATAAATTGTCTGGCTCTACTTACATCTGCAGCATCTGATGGGTCTGATTATCTCTTCACTGGGAGCCGTGATGGTAGGTTAAAACGAT
upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G43070.1 (Glycine max), 3'ss of exon 2
tcccctttgctaggttactgttctgttgataattcttttactgttagaggatttataaattcttatgtt---actccattgtggaatgtttccctatttgcagCATTGTGCAGGCATAAATTGTTTGGCTGTATGGAAGCCATTGGCTCCTGATGGGCGTGATTACCTCTTCACTGGAAGCCGTGATGGCACGCTGAAGAGGT
| ||| | || | | ||| | | ||| | | || || ||| | | || || | || |||| || ||| | | |||||||||||||||||||||||||| ||||| || | | | || |||||||| |||||| || ||||| |||||||||||||||| | | || | |
ttttattttcatcactatttcttatttggt--tgatttcaattttgatggttttcttagttgcacagtctagaatcgcttgtaagttggttcttt-tctgcagCATTGTGCAGGCATAAATTGTCTGGCTCTACTTATGTCTGCAGCATCTGATGGGTCTGATTATCTGTTCACCGGAAGCCGTGATGGCAGGTTAAAACGAT
upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G40360.1 (Glycine max), 3'ss of exon 2
tcccctttgctaggttactgttctgttgataattcttttactgttagaggatttataaattcttatgtt---actccattgtggaatgtttccctatttgcagCATTGTGCAGGCATAAATTGTTTGGCTGTATGGAAGCCATTGGCTCCTGATGGGCGTGATTACCTCTTCACTGGAAGCCGTGATGGCACGCTGAAGAGGT
| ||| | | | || | ||| | | || | | || | ||| | | || || | || |||| || || | | |||||||||||||||||||||||||| ||||| || | | || |||||||| |||||| ||||||||||| ||||||||||||| | | || | |
tattttttcatcaatattttttattttggt--tgaattcaattttgatagttttcttagttgcacagtctggaatcatttgtaagttggctcttt-tctgcagCATTGTGCAGGCATAAATTGTCTGGCTCTACTTACATCTGCTGCATCTGATGGGTCTGATTATCTCTTCACTGGGAGCCGTGATGGCAGGTTAAAACGAT
upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G40360.1 (Glycine max), 3'ss of exon 2
tcccctttgctaggttactgttctgttgataattcttttactgttagaggatttataaattcttatgtt---actccattgtggaatgtttccctatttgcagCATTGTGCAGGCATAAATTGTTTGGCTGTATGGAAGCCATTGGCTCCTGATGGGCGTGATTACCTCTTCACTGGAAGCCGTGATGGCACGCTGAAGAGGT
| ||| | | | || | ||| | | || | | || | ||| | | || || | || |||| || || | | |||||||||||||||||||||||||| ||||| || | | || |||||||| |||||| ||||||||||| ||||||||||||| | | || | |
tattttttcatcaatattttttattttggt--tgaattcaattttgatagttttcttagttgcacagtctggaatcatttgtaagttggctcttt-tctgcagCATTGTGCAGGCATAAATTGTCTGGCTCTACTTACATCTGCTGCATCTGATGGGTCTGATTATCTCTTCACTGGGAGCCGTGATGGCAGGTTAAAACGAT
upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G40440.1 (Glycine max), 3'ss of exon 2
tcccctttgctaggttactgttctgttgataattcttttactgttagaggatttataaattcttatgtt---actccattgtggaatgtttccctatttgcagCATTGTGCAGGCATAAATTGTTTGGCTGTATGGAAGCCATTGGCTCCTGATGGGCGTGATTACCTCTTCACTGGAAGCCGTGATGGCACGCTGAAGAGGT
| ||| | | | || ||||| | | ||| | | || | ||| | | || || | || |||| || || | | |||||||||||||||||||||||||| ||||| || | | | ||| |||||||| |||||| |||||||| || ||||||||||||| | | || | |
tttattttcatcaatatttcttatgttgct--tgatttcaattttgatagttttcttagttgcacagtctagaatcgtttgtaagttggctcttt-tctgcagCATTGTGCAGGCATAAATTGTCTGGCTCTACTTACGTCTGCGGCATCTGATGGGTCTGATTATCTCTTCACCGGCAGCCGTGATGGCAGGTTAAAACGAT
upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 1
tcccctttgctaggttactgttctgttgataattcttttactgttagaggatttataaattcttatgttactccattgt----ggaatgtttccctatttgcagCATTGTGCAGGCATAAATTGTTTGGCTGTATGGAAGCCATTGGCTCCTGATGGGCGTGATTACCTCTTCACTGGAAGCCGTGATGGCACGCTGAAGAGGT
| | | | | || ||| ||| || || || | | | || || | | | ||| | | | | | | | ||||||| ||||||||||||||||||||| |||| ||| | | |||||| || ||| |||||||||||||| |||||||| | | | || |||
----catcaatcttgcattttttatttggaaatctttataaagtaaaaaatatcattggttggtgtatctgaatattatctttaaagtttgttattttctgcagCACTGTGCAGGCATAAATTGTTTGTCTGTTCTTAAGTCTACTACATTTGATGGATCTGGTTATCTCTTCACTGGAAGTCGTGATGGGAAGTTAAATCGGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agaggatttataaattcttatgttactccattgtggaatgtttccctatttgcagCATTGTGCAGGCATAAATTGTTTGGCTGTATGGAAGCCATTGGCTCCTGATGGGCGTGATTACCTCTTCACTGGAAGCCGTGATGGCACGCTGAAGAGGT
tttccctattt CT-rich tract
atttataaattcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcccctttgctaggttactgttctgttgataattcttttactgttagaggatttataaattcttatgttactccattgtggaatgtttccctatttgcagCATTGTGCAGGCATAAATTGTTTGGCTGTATGGAAGCCATTGGCTCCTGATGGGCGTGATTACCTCTTCACTGGAAGCCGTGATGGCACGCTGAAGAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
tcccctt
- - - - - - - - - - - ctgttga
- - - - - - - - - - - - - - - - - - - - ctgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaatgt