1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagttcaagaatttgaaatgaattgaaacttggttttgttgtctgaagaagtggcttatgcttgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAGTGGATCCATCACCTGAAAACACAGGTTCAGCCCAAGATCCTTCTACGG
species | Vitis vinifera |
transcript | Vv14s0030g00700.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGA GGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAEST: gi|161709339|gb|FC059668.1|FC059668
genomic: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGAgtgagttcaa ... tgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGA GGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAEST: gi|26262203|gb|CA813266.1|CA813266
genomic: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGAgtgagttcaa ... tgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGA GGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAEST: gi|26263640|gb|CA814703.1|CA814703
genomic: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGAgtgagttcaa ... tgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGA GGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAEST: gi|30136525|gb|CB921863.1|CB921863
genomic: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGAgtgagttcaa ... tgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
EST: GCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGA GGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAEST: gi|30132412|gb|CB917751.1|CB917751
genomic: GCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGAgtgagttcaa ... tgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGA GGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAEST: gi|28966801|gb|CB345834.1|CB345834
genomic: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGAgtgagttcaa ... tgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGA GGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAEST: gi|26262474|gb|CA813537.1|CA813537
genomic: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGAgtgagttcaa ... tgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGA GGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAEST: gi|26262213|gb|CA813276.1|CA813276
genomic: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGAgtgagttcaa ... tgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGA GGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAEST: gi|110361203|gb|EC924659.1|EC924659
genomic: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGAgtgagttcaa ... tgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGA GGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAEST: gi|30135317|gb|CB920655.1|CB920655
genomic: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGAgtgagttcaa ... tgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGA GGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAEST: gi|110380802|gb|EC946095.1|EC946095
genomic: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGAgtgagttcaa ... tgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGA GGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
genomic: GGTCTGAGCTCTTCAAGAAGCAAATAGACAACTTAAAGACAAACCACAGAgtgagttcaa ... tgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCA
atgaattgaaacttggttttgttgtctgaagaagtggcttatgcttgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAGTGGATCCATCACCTGAAAACACAGGTTCAGCCCAAGATCCTTCTACGG
cttgtctt CT-rich tract
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcaagaatttgaaatgaattgaaacttggttttgttgtctgaagaagtggcttatgcttgtcttgtagGGCACCTTTGTATTACAAGATAATAAGTTCCGTTGGCTTTCACGCATGTCAGTGGATCCATCACCTGAAAACACAGGTTCAGCCCAAGATCCTTCTACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA