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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgataagatctttggctcctcatggtttatctgtaataattcctcttgtatgcaataggaattgatgtgttatttgaaagattgaactgatggtttgatttatttgctagagcagGCCTGTTATTCTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGA

Basic information

species Vitis vinifera
transcript Vv14s0006g02480.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g04660.2 (Oryza sativa), 3'ss of exon 4
gtgataagatctttggctcctcatggtttatctgtaataattcctcttgtatgcaataggaattgatgtgttatttgaaagattgaactgatggtttgatttatttgctagagcagGCCTGTTATTCTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGA
       |||  | |    |||    |||   | | ||  |||      | || ||||  || |  ||  ||   |  |      |||| ||       || |||       |||||  || | | ||| || ||| |||| |  ||| | |||  ||   |||| |||||||| ||  ||||| | ||||||||||||||||| |||||||||||
-----gtgattgtcgatgtctcc--attttcttctgatggttcactacttctg-aatacaaagttctgaatttcatataccgagaaactcatcagaatgttaattct-----gcagGTGTGCTTTACTCGGTGCTGATAACTGCAGTTGTAACTACTGTGGTAAAGAATGCAGTAGGAAGACCTAGGCCAGACTTCTTTTGGCGGTGTTTTCCTGA

upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G53100.2 (Glycine max), 3'ss of exon 3
gtgataagatctttggctcctcatggtttatctgtaataattcctcttgtatgcaataggaattgatgtg-ttatttgaaagattgaactgatggtttgatttatttgctagagcagGCCTGTTATTCTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGA
||  |||  | ||| | | | | |  ||||| |  | |  |  |     ||| | ||  |     |||    | ||||| |     |  | |  |    | || ||| || |  ||||  | || ||||| ||| |  ||||||  ||  ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||
gtattaa--tttttagatacccctcatttattta-attgctagcaagcatattctatttgttaaaatgaaactgtttgaga-----agataacaggaaaaattgttttctggcacagGTTTATTGTTCTCCGTTTTAATAACAGCAGTATTTACTGAGGCAATAAAAAATGCAGTAGGTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGA

upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G09820.1 (Glycine max), 3'ss of exon 3
gtgataagatctttggctcctcatggtttatctgtaataattcctcttgtatgcaataggaattgatgtgttatttgaaagattgaactgatggtttgat-ttatttgctagagcagGCCTGTTATTCTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGA
||  |||    |||   | | | |  ||||| |  | |  |  |     ||| | ||  |  ||||   |  | |     | | ||    ||     ||  || |||||| |  |||| || || |||||  || |  ||||    ||  ||||||| || |||||||||||||| ||||||||||| || |||||||| ||||| |||||||| ||
gtattaaa--ttttaaatacccctcatttattta-attggtagcaagcatattctatttg--ttgaaacgacact-----gttggagacaataacaggaaattgtttgctggcacagGTCTATTGTTCTCCATTTTAATAACCTCAGTATTTACTGAAGCCATAAAAAATGCAGTAGGTCGACCTCGTCCGGACTTCTTCTGGCGATGTTTTCCAGA

upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G02600.5 (Arabidopsis thaliana), 3'ss of exon 3
gtgataagatctttggctcctcatggtttatctgtaataattcctcttgtatgcaataggaattgatgtgttatttgaaagattgaactgatggtttgatttatttgctagagcagGCCTGTTATTCTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGA
            || |   || |   ||| |     | | | ||  |||  |     |  |  |  | | |    |  |  ||| |    |  ||| |  ||  ||| | | ||||| || |||| |||||||||||| ||||  ||  |||| ||||||||||| ||||||||||||||||| || || |||||||| |||||||||||||| ||
-----------gttagaaacttagaatttctgaaggagagtaccgtttgctt----caaaatgtcttctttcgcatatataattaacagtaaagttggcctttcttgat-gtgcagGTCTCTTATACTCTGTTCTGGTGACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgatgtgttatttgaaagattgaactgatggtttgatttatttgctagagcagGCCTGTTATTCTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGA
         ttatttgaaagatt  TA-rich tract