Sequence
atgc intronic sequence ATGC exonic sequencegtttgttgatgttgattgcacttttttgtttcatcctttaaaagaaaaatatttccttgctatgaaaacttgtttttagaagaggatgcactgtattatacctggacttattggggcatgctgtttgcttgcaatgtttctcatggcacagTTTGTTGGCCTTGTCTCCTGAGGATGTGATACCTGCTGTATATCTCTGCACAAATAAGATTGCTGCTGACCATGAAAATATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0006g02190.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g49180.1 (Oryza sativa), 3'ss of exon 2
gtttgttgatgttgattgcacttttttgtttcatcctttaaaagaaaaatatttccttgctatgaaaacttgtttttagaagaggatgcactgtattatacctggacttattggggcatgctgtttgcttgcaatgtttctcatggcacagTTTGTTGGCCTTGTCTCCTGAGGATGTGATACCTGCTGTATATCTCTGCACAAATAAGATTGCTGCTGACCATGAAAATATG
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--------------------gtttttcctataaccctctaag---------ttacattgc-gtgcag------tttttgattatcatcta------tatgttta---tgattggggaatatacttaacatcttatatt-ctca-agtgcagTTTGCTTGCCTTATCACCTGATGATGTGCTACCTGCTGTTTATTTATGTACTAATAAAATTTCTCCTGACCATGAAAATATT
upper sequence: Vv14s0006g02190.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G53000.1 (Glycine max), 3'ss of exon 1
-gtttgttgatgttgattgcacttttttgtttcatcctttaaaagaaaaatatttccttgctatgaaaacttgtttttagaagaggatgcactgtattatacctggacttattggggcatgctgtttgcttgcaatgtttctcatggcacagTTTGTTGGCCTTGTCTCCTGAGGATGTGATACCTGCTGTATATCTCTGCACAAATAAGATTGCTGCTGACCATGAAAATATG
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gttcctttgttactaatcacactcttt-gtgttatcc--------------atttcctccctctt----tttttattgaatagtgaaactgtttttcccgtaattggctgattgaggaacattatttgcatgcaatgtttct-atcacatagTTTGTTGGCCTTATCTCCAGCAGATGTGCTTCCTGCTGTGTATCTATGCACTAACAAAATTGCTGCAGACCATGAAAATAAG
upper sequence: Vv14s0006g02190.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G66730.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttgttgatgttgattgcacttttttgtttcatcctttaaaagaaaaatatttccttgctatgaaaacttgtttttagaagaggatgcactgtattatacctggacttattggggcatgctgtttgcttgcaatgtttctcatggcacagTTTGTTGGCCTTGTCTCCTGAGGATGTGATACCTGCTGTATATCTCTGCACAAATAAGATTGCTGCTGACCATGAAAATATG
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-------------------------------------------gttgcctactctctttctttctcgttcactctattgaataagatgcagca-atgataattgg---tacttaaatttg---------tgtaaattcatccat----cagCTTGTTTGCTCTCTCTCCAGAAGATGTTCTGCCCGCTGTTTATCTTTGCACAAATAAGATTGCCGCTGACCATGAGAATATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatacctggacttattggggcatgctgtttgcttgcaatgtttctcatggcacagTTTGTTGGCCTTGTCTCCTGAGGATGTGATACCTGCTGTATATCTCTGCACAAATAAGATTGCTGCTGACCATGAAAATATG
tgtttctc CT-rich tract
acttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttgatgttgattgcacttttttgtttcatcctttaaaagaaaaatatttccttgctatgaaaacttgtttttagaagaggatgcactgtattatacctggacttattggggcatgctgtttgcttgcaatgtttctcatggcacagTTTGTTGGCCTTGTCTCCTGAGGATGTGATACCTGCTGTATATCTCTGCACAAATAAGATTGCTGCTGACCATGAAAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT