1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttcatcaacactttggaatttcttattatgtaaaaatcaaaattctgtatccttgttacttccctcagattttttcatgtttttattcaacatacacagGTTGGTGAAGATGAATTTGGTTACATGCTTGCTGATATTTTAAAAGAGAATAATGTAAACAATGAAGGGATGCGCTTTGATCCTGGTGCTCGAACTGCTT
species | Vitis vinifera |
transcript | Vv14s0006g01410.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGCTGTTGGCATTGCTCGTCTTGGTGGCTCTTCAGCTTTTATTGGAAAG GTTGGTGAAGATGAATTTGGTTACATGCTTGCTGATATTTTAAAAGAGAATEST: gi|30136156|gb|CB921494.1|CB921494
genomic: TCGCTGTTGGCATTGCTCGTCTTGGTGGCTCTTCAGCTTTTATTGGAAAGgtatcatttc ... acatacacagGTTGGTGAAGATGAATTTGGTTACATGCTTGCTGATATTTTAAAAGAGAAT
EST: TCGCTGTTGGCATTGCTCGTCTTGGTGGCTCTTCAGCTTTTATTGGAAAG GTTGGTGAAGATGAATTTGGTTACATGCTTGCTGATATTTTAAAAGAGAATEST: gi|27586378|gb|CB009073.1|CB009073
genomic: TCGCTGTTGGCATTGCTCGTCTTGGTGGCTCTTCAGCTTTTATTGGAAAGgtatcatttc ... acatacacagGTTGGTGAAGATGAATTTGGTTACATGCTTGCTGATATTTTAAAAGAGAAT
EST: TCGCTGTTGGCATTGCTCGTCTTGGTGGCTCTTCAGCTTTTATTGGAAAG GTTGGTGAAGATGAATTTGGTTACATGCTTGCTGATATTTTAAAAGAGAATEST: gi|161706859|gb|FC057634.1|FC057634
genomic: TCGCTGTTGGCATTGCTCGTCTTGGTGGCTCTTCAGCTTTTATTGGAAAGgtatcatttc ... acatacacagGTTGGTGAAGATGAATTTGGTTACATGCTTGCTGATATTTTAAAAGAGAAT
EST: TCGCTGTTGGCATTGCTCGTCTTGGTGGCTCTTCAGCTTTTATTGGAAAG GTTGGTGAAGATGAATTTGGTTACATGCTTGCTGATATTTTAAAAGAGAAT
genomic: TCGCTGTTGGCATTGCTCGTCTTGGTGGCTCTTCAGCTTTTATTGGAAAGgtatcatttc ... acatacacagGTTGGTGAAGATGAATTTGGTTACATGCTTGCTGATATTTTAAAAGAGAAT
ctgtatccttgttacttccctcagattttttcatgtttttattcaacatacacagGTTGGTGAAGATGAATTTGGTTACATGCTTGCTGATATTTTAAAAGAGAATAATGTAAACAATGAAGGGATGCGCTTTGATCCTGGTGCTCGAACTGCTT
attttttcatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcatcaacactttggaatttcttattatgtaaaaatcaaaattctgtatccttgttacttccctcagattttttcatgtttttattcaacatacacagGTTGGTGAAGATGAATTTGGTTACATGCTTGCTGATATTTTAAAAGAGAATAATGTAAACAATGAAGGGATGCGCTTTGATCCTGGTGCTCGAACTGCTT
- -catcaac
- - - - - - - - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtt