Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtatcatatttttcataacagaatattgatttctccttatttatgaagtcctcctcgcttaccttgtctccatatcagCTTATTTTATAAACAGGAAATGGAACTTTCTCTTATAGGCCTTCAGAATGCAGGAAAGACATCTCTTCTTAATGCCATTGCT

Basic information

species Vitis vinifera
transcript Vv14s0006g01090.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G39540.1 (Glycine max), 3'ss of exon 1
----------------gttagtatcatatttttcataacagaatatt---gatttctccttatttatgaagtcctcctcgcttaccttgtctccatatcagCTTATTTTATAAACAGGAAATGGAACTTTCTCTTATAGGCCTTCAGAATGCAGGAAAGACATCTCTTCTTAATGCCATTGCT
                 |||  |    |   |   | |    || ||   | || ||  | | ||  | | |    ||  ||    |  | |   | ||||||| |||| ||||||||| ||||||||||| ||| | |||||||||||||| || ||||| |||||| | ||||| ||||||
cgagattcaggaaagccttaaaagttgagcctaggttatttgattttaagggttccttttaagttgaggattgtgactttct-gtttgttgtttgtgtcagCTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGCTGGCAAGACTTCTCTTGTCAATGCAATTGCT

upper sequence: Vv14s0006g01090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G41170.1 (Glycine max), 3'ss of exon 1
-------gttagtatcatatttttcataacagaatattgatttctccttatttatgaagtcctcct-cgcttac-----cttgtct-----ccatatcagCTTATTTTATAAACAGGAAATGGAACTTTCTCTTATAGGCCTTCAGAATGCAGGAAAGACATCTCTTCTTAATGCCATTGCT
        |||  |    |  ||   | |     | || |    ||||| |   | ||| |||     | ||         ||| |        | ||||||| |||| ||||||||| ||||||||||| ||| | |||||||||||||| || ||||| |||||| | ||||| ||||||
gaaaagccttaaaagttgagcttaggttaattggttttaagggttccttttaagtcaagccctttaatgattgtgagtttctgtttgttggttgtgtcagCTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGCTGGCAAGACTTCTCTTGTCAATGCAATTGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgatttctccttatttatgaagtcctcctcgcttaccttgtctccatatcagCTTATTTTATAAACAGGAAATGGAACTTTCTCTTATAGGCCTTCAGAATGCAGGAAAGACATCTCTTCTTAATGCCATTGCT
                                cgcttac  putative branch site (score: 3)
                         tcctcctcgcttacct  CT-rich tract
             ttatttatgaa  TA-rich tract