1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtagctacttaaccattttaaaatggaaatggtgtttttcctgtcttgctaattagttggtcataatgattctgtttcattatcaagcttgcttattctgtgctcgcattttcttgacatgtctgttataccatctccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCACTTCGACCTATTGTCCATGGGCAAACTCTGAAGTACAATATGAAAGTTAG
species | Vitis vinifera |
transcript | Vv14s0006g00820.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAG CTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCACEST: gi|26256908|gb|CA807971.1|CA807971
genomic: TGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAGgtagctactt ... ccatctccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCAC
EST: TGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAG CTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCACEST: gi|29781900|gb|CB346727.2|CB346727
genomic: TGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAGgtagctactt ... ccatctccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCAC
EST: TGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAG CTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCACEST: gi|30303531|gb|CB980325.1|CB980325
genomic: TGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAGgtagctactt ... ccatctccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCAC
EST: TGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAG CTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCACEST: gi|26256977|gb|CA808040.1|CA808040
genomic: TGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAGgtagctactt ... ccatctccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCAC
EST: TGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAG CTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCACEST: gi|110387515|gb|EC952187.1|EC952187
genomic: TGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAGgtagctactt ... ccatctccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCAC
EST: TGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAG CTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCAC
genomic: TGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAGgtagctactt ... ccatctccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCAC
agcttgcttattctgtgctcgcattttcttgacatgtctgttataccatctccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCACTTCGACCTATTGTCCATGGGCAAACTCTGAAGTACAATATGAAAGTTAG
tcttgac putative branch site (score: 3)
ccatctcc putative PPT
attttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctacttaaccattttaaaatggaaatggtgtttttcctgtcttgctaattagttggtcataatgattctgtttcattatcaagcttgcttattctgtgctcgcattttcttgacatgtctgttataccatctccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCACTTCGACCTATTGTCCATGGGCAAACTCTGAAGTACAATATGAAAGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG