1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcgaattcaatgaattgatgctgaatttcatttccctacccggaaaacttgaagcagagatcaaatcatttgtccctctatctttattttttattcttagGACAAATCTGCCTGCCCATTCCAAAGAGACAAGTTTAGTTTCCAGTGGCTCATTAACACTAGATTTTACTTGTGCGTCTTAATCAGTGAGGACAGAAGAA
species | Vitis vinifera |
transcript | Vv13s0139g00120.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
aacttgaagcagagatcaaatcatttgtccctctatctttattttttattcttagGACAAATCTGCCTGCCCATTCCAAAGAGACAAGTTTAGTTTCCAGTGGCTCATTAACACTAGATTTTACTTGTGCGTCTTAATCAGTGAGGACAGAAGAA
tttgtccctctatctt CT-rich tract
tctatctttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgaattcaatgaattgatgctgaatttcatttccctacccggaaaacttgaagcagagatcaaatcatttgtccctctatctttattttttattcttagGACAAATCTGCCTGCCCATTCCAAAGAGACAAGTTTAGTTTCCAGTGGCTCATTAACACTAGATTTTACTTGTGCGTCTTAATCAGTGAGGACAGAAGAA
- - - -caatgaa
- - - - - - - - gatgctg
- - - - - - - - - - - - - - - - -ccctacc
- - - - - - - - - - - - - - - - - - - - -ggaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - -aagcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaat