Sequence
atgc intronic sequence ATGC exonic sequencegtatatatatcctcaaatttagaattagtaagttctcagttgctccagttgacctgttactatcaagtttaagtgcctttctatgggaattacagAATGACCTGGTACATGGTTGGGGTCTTAACTTTGCTCTTAGAAGATGTGTAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 11
---gtatatatatcctcaaatttagaat-tagtaagttctcagttgctccagttgacctgttactatcaagtttaagtgccttt---ctatgggaattacagAATGACCTGGTACATGGTTGGGGTCTTAACTTTGCTCTTAGAAGATGTGTAGAG
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gttgactgttaatcctaaagtcctaattgttttaaaagatgtccttgataagttgttctttaagcacttggtaaaattatgattgtaccacttgacatgcagAATGACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAAATGTGTTGAG
upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 11
---------------------------------gtatatatatcctcaaatttagaattagtaagttctcagttgctccagttgacctgttact-atcaagtttaagtgcctttctatgggaattacagAATGACCTGGTACATGGTTGGGGTCTTAACTTTGCTCTTAGAAGATGTGTAGAG
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gttgactgattaatcctgaagtcctaattgctttaaaagatgcccttgactagttgttttttatgatgcatccttgacaagttctttaagcacttagtaaaattatggttgtaccacttgacattgcagAATGACTTGGTCCACGGGTGGGGTCTTGATTTTGCTCTTAGAAGATGTGTTGAG
upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 11
gtatatatatcctcaaatttagaattagtaagttctcagttgctccagttgacctgtta---ctatcaagtttaagtgcctttctatggg--aattacagAATGACCTGGTACATGGTTGGGGTCTTAACTTTGCTCTTAGAAGATGTGTAGAG
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--gttccttgcttcatcatctgtttcattcttcattcatcttccctaactctctcttcttgcctgccttacttatacgctttaccttaaactgttaacagAATGATTTGGTACACGGTTGGGGTCTTGACTTTGCACTCAGAAGATGTGTTGAG
upper sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G24570.1 (Arabidopsis thaliana), 3'ss of exon 10
gtatatatatcctcaaatttagaattagtaagttctcagttgctccagttgacctgttactatcaagtttaagtgcctttctatgggaattacagAATGACCTGGTACATGGTTGGGGTCTTAACTTTGCTCTTAGAAGATGTGTAGAG
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-----gttacacttactttattatctattggctccttcatatcttcatataatgtctccttcttgcacctaattgtatatgaaccaaaa--acagAATGATTTGGTTCACGGTTGGGGTCTTGACTTTGCACTGAGAAGATGTGTTGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctccagttgacctgttactatcaagtttaagtgcctttctatgggaattacagAATGACCTGGTACATGGTTGGGGTCTTAACTTTGCTCTTAGAAGATGTGTAGAG
agttgac putative branch site (score: 4)
aagtttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatatatatcctcaaatttagaattagtaagttctcagttgctccagttgacctgttactatcaagtttaagtgcctttctatgggaattacagAATGACCTGGTACATGGTTGGGGTCTTAACTTTGCTCTTAGAAGATGTGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG