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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttggtaattttcttgaagtttttatttgcaacttaaaatgtttttgtggtctgattgtgtaattgattttttaaccagGTACAACTACCAAAACTGTTTCAGAGGAATGGTGGGAAGAAACTGATAAGAGGGCCAATGCTTGGCCTCGAACTGCAGGGCCTCCTGTTGCATTGAACCC

Basic information

species Vitis vinifera
transcript Vv13s0074g00320.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689223|gb|EC935552.1|EC935552
EST:     AGTCGCATATATATGCGACCATTCTGTTTCTGATGGCAAGCTATTTGGAG                         GTACAACTACCAAAACTGTTTCAGAGGAATGGTGGGAAGAAACTGATAAGA
genomic: AGTCGCATATATATGCGACCATTCTGTTTCTGATGGCAAGCTATTTGGAGgtgagttttg ... ttttaaccagGTACAACTACCAAAACTGTTTCAGAGGAATGGTGGGAAGAAACTGATAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgcaacttaaaatgtttttgtggtctgattgtgtaattgattttttaaccagGTACAACTACCAAAACTGTTTCAGAGGAATGGTGGGAAGAAACTGATAAGAGGGCCAATGCTTGGCCTCGAACTGCAGGGCCTCCTGTTGCATTGAACCC
                                     aattgat  putative branch site (score: 4)
                                           tttttt  CT-rich tract
                              attgtgtaattgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttttggtaattttcttgaagtttttatttgcaacttaaaatgtttttgtggtctgattgtgtaattgattttttaaccagGTACAACTACCAAAACTGTTTCAGAGGAATGGTGGGAAGAAACTGATAAGAGGGCCAATGCTTGGCCTCGAACTGCAGGGCCTCCTGTTGCATTGAACCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG