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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattagcttgcagaatgcgtgaactaccttaacacagattagtcatcactcatcatacttactttaaggatatatatttccaatatctaggtggtggtgagctggcaatcctaatctttgattgaagctcataatttcggttgattttatcttttcagGCACAGTTGGGCATGTGGCACATGGGAAGTCCACAGTTGTAAAAGCCATATCTGGTGTTCAG

Basic information

species Vitis vinifera
transcript Vv13s0074g00310.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os12g41400.1 (Oryza sativa), 3'ss of exon 2
gtaattagcttgcagaatgcgtgaactaccttaacacagattagtcatcactcatcatacttactttaaggatatatatttccaatatctaggtggtggtgagctggcaatcctaatctt-tgattgaagctcataatttcggttgattttatcttttcagGCACAGTTGGGCATGTGGCACATGGGAAGTCCACAGTTGTAAAAGCCATATCTGGTGTTCAG
                                                            ||   || |  |   | ||| | ||| |   | |  | ||   |||    |   |  ||  ||  ||    | ||| | |  |||| |||| |    ||||| ||  ||||||||||||| ||||| |||||||| ||||| ||||| |||||||| ||||||
-----------------------------------------------------------tttgtgttgactagggacattgc-aatgttatgttatttgtcttctgattttgtgagcctcctgcatgggcatgatattctttgttg-ttttgtaacatcagGTACCATTGGGCATGTGGCCCATGGAAAGTCCACCGTTGTGAAAGCTATATCTGGAGTTCAG

upper sequence: Vv13s0074g00310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os12g07740.1 (Oryza sativa), 3'ss of exon 2
gtaattagcttgcagaatgcgtgaactaccttaacacagattagtcatcactcatcatacttactttaaggatatatatttccaatatctaggtggtggtgagctggcaatcctaatctttgattgaagctcataatttcggttgattttatcttttcagGCACAGTTGGGCATGTGGCACATGGGAAGTCCACAGTTGTAAAAGCCATATCTGGTGTTCAG
                                               |   | |  |     | | ||| | |||||  ||   ||||||   | |||     |  |||     |         |||   || |  ||||  |    | ||   ||||||| ||  | ||||||||||| ||||| |||||||| ||||| || || |||||||| ||||||
----------------------------------------------ttgtataactagggacattgtaatgttatattatttgcatatctgatttgtgaacttcctgcagcggca---------tgacattctt--tttcattc---tgtaaaatttcagGTACCATAGGGCATGTGGCCCATGGAAAGTCCACTGTTGTGAAGGCTATATCTGGAGTTCAG

upper sequence: Vv13s0074g00310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G107654_T01 (Zea mays), 3'ss of exon 2
gtaattagcttgcagaatgcgtgaactaccttaacacagattagtcatcactcatcatacttactttaaggatatatatttccaatatctaggtggtggtgagctggcaatcctaatctttgattgaagctcataatttcggttgattttatcttttcagGCACAGTTGGGCATGTGGCACATGGGAAGTCCACAGTTGTAAAAGCCATATCTGGTGTTCAG
                                                           ||| || | |      | ||  ||  ||| |   |   | |    ||  ||       ||    | | | |  |  ||||    ||    |||||   |||| ||  |||| |||||||| ||||| |||||||| ||||| ||||| |||||||||||||||
---------------------------------------------------------agcttcctatgaattcggaaatggcctgtatatgtattcagattttatgcgaaaggaggcctcctgtggtaccataatattttttctgcaaatatct---cagGTACCATTGGCCATGTGGCTCATGGAAAGTCCACTGTTGTTAAAGCTATATCTGGTGTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcaatcctaatctttgattgaagctcataatttcggttgattttatcttttcagGCACAGTTGGGCATGTGGCACATGGGAAGTCCACAGTTGTAAAAGCCATATCTGGTGTTCAG
                                         ttttatcttttc  CT-rich tract
                                     ttgattttatctttt  TA-rich tract