Sequence
atgc intronic sequence ATGC exonic sequencegtatgattttctcactgattttcttccactcattccttttcttttctgggtttttttgatagatgtttaattttcctttttccttttgttatatggcagGAAATGGAAGTAAATTTAATTATCACGGATTATTCCATGCCTGGAATGACTGGCTATGATCTCCTCAGAAAGATCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G37770.1 (Glycine max), 3'ss of exon 2
gtatgattttctcactgattttcttccactcattccttttcttttctgggtttttttgatagatgtttaattttcctttttccttttgttatatggcagGAAATGGAAGTAAATTTAATTATCACGGATTATTCCATGCCTGGAATGACTGGCTATGATCTCCTCAGAAAGATCAAG
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gttcaattctctaactaaataatt---actcacacatatgccctaaaacatttttgtggacaactttgtattaaccgttggttaaattgttcatg-cagGATGTAGATATAAACCTGATTATAACAGATTACTGCATGCCAGGAATGACTGGCTATGATCTGCTGAGAAAAATCAAG
upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G21650.1 (Glycine max), 3'ss of exon 2
gtatgattttctcactgattttcttccactcattcctt----ttcttttctgggtttttttgatagatgtttaatttt-cctttttccttttgttatatggcagGAAATGGAAGTAAATTTAATTATCACGGATTATTCCATGCCTGGAATGACTGGCTATGATCTCCTCAGAAAGATCAAG
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---ttgattactaaatgctactcatacttacatattttaaacttttttattgggcaagttagaaagatgcataatctaatcattttacttctgat-tgctgcagGATGTAGAAGTAAACCTGATCATAACTGATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTGAGAAAGATCAAG
upper sequence: Vv13s0067g03510.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G26770.1 (Glycine max), 3'ss of exon 2
gtatgattttctcactgattttcttccactcattccttttcttttctgggtttttttgatagatgtttaattttcctttttccttttgttatatggcagGAAATGGAAGTAAATTTAATTATCACGGATTATTCCATGCCTGGAATGACTGGCTATGATCTCCTCAGAAAGATCAAG
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gtccaattctctaactaattaattact-tacacatatggcctaaaacattttttttagacaagtttgtattaatcattggttcaattgtt-catg-cagGATGTAGATGTAAACTTGATTATAACAGATTACTGCATGCCAGGACTGACTGGCTATGATCTGCTGAGAAAAATCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgggtttttttgatagatgtttaattttcctttttccttttgttatatggcagGAAATGGAAGTAAATTTAATTATCACGGATTATTCCATGCCTGGAATGACTGGCTATGATCTCCTCAGAAAGATCAAG
gtttaat putative branch site (score: 4)
tgtttaattttccttt CT-rich tract
tttttttgatagatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgattttctcactgattttcttccactcattccttttcttttctgggtttttttgatagatgtttaattttcctttttccttttgttatatggcagGAAATGGAAGTAAATTTAATTATCACGGATTATTCCATGCCTGGAATGACTGGCTATGATCTCCTCAGAAAGATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA