Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttcatttgcccaattattacatttcagcatcttatttttttcacgccaagttagtcccaacaattaattagaattcaaaatgaatctgcagGAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAG

Basic information

species Vitis vinifera
transcript Vv13s0067g03480.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g72330.1 (Oryza sativa), 3'ss of exon 3
---------------------------gtatcttcatttgcccaattattacatttcagcatcttatttttttcacgccaagttagtcccaacaattaattagaattcaaaatgaatctgcagGAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAG
                            | |  || | ||  || | || |   ||  |    ||  ||  |  | |   ||| |          ||  ||    ||||   ||    | ||||  ||  | ||  | || ||||| ||||||||||||||||| ||||||||| | ||| | ||||| | |||
gtaagtttttgtttgcagagaattgaattcttatcctctgagcattcataaatcttgggtccttttgttgctggaagtggagtaaaatttgttcctt--ttgctgttcattttgggggtacagGGATCATCTTCATTGAAGGACATACCAGTTGTGATCATGTCTTCTGAGAATGTGCCTGCAAGGATCAACAG

upper sequence: Vv13s0067g03480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G21650.1 (Glycine max), 3'ss of exon 3
--gtatcttcatttgcccaattattaca--tttcagcatcttatttttttcacgccaagttagtcccaacaattaattagaattcaaaatgaatctgcagGAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAG
    | |    ||||     | || |||   ||||    ||| | | | |  |      | | |    | || |||| | |       ||  || ||||||| |||| ||||||||||||||| ||||| ||||| |||||||| |||||| ||||  | ||||||| |||
ctcaaaccatttttgtgatgtcataacaaccttcaattacttgtatatcttccctggtttgattttagaaaaataataacatgaagttattgatttgcagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAG

upper sequence: Vv13s0067g03480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G26770.1 (Glycine max), 3'ss of exon 3
----gtatcttcatttgcccaat-tattacat-ttcagcatcttatttttttcacgccaagttagtcccaacaattaat-tagaattcaaaatgaatctgcagGAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAG
      || | |   || |||   |  || || ||   || | | | | ||   |  |  | |  |    | || |||| |  | |||    |  || ||||||| |||| |||||||||| |||| ||||||||||| |||||||| |||||| | || || ||||| | |||
aatcaaatttgctcatggccatcatgatatatctttgacaacctgtatattcttctgcttgatgatgttgaaaaataatattaagttct---ttgatttgcagGAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAG

upper sequence: Vv13s0067g03480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G37770.1 (Glycine max), 3'ss of exon 3
----gtatcttcatttgcccaat-tattacat-ttcagcatcttatttttttcacgccaagttagtcccaacaattaat-tagaattcaaaatgaatctgcagGAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAG
      || |     || |||   |  || || ||   || | | | | ||   |  |  | |  |   || || |||| |  | |||    |  || ||||||| |||| |||||||||| |||| ||||||||||| |||||||| |||||| | || || ||||| | |||
aatcaaatttgatcatggccatcatggtatatctttgacagcctgtatattcttctgcttgatgatgttaaaaaataatattaagttcc---ttgatttgcagGAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAG

upper sequence: Vv13s0067g03480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G29250.1 (Glycine max), 3'ss of exon 3
----------gtatcttcatttgcccaattattacatttcagcatcttatttttttcacgccaagttagtccca-acaattaattagaattcaaaatgaatctgcagGAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAG
            || ||  |       ||| | ||  ||||    ||| | | || |   |    ||  | | | | || |||    || | |   |  |  || |||| |||| ||||||||||||||| ||||| ||||| |||||||| |||||| ||||  | ||||| | |||
aactctcaaaccatttttgtgatgtgcattgtaac-cttcaattgcttgtatcttcc---ctggtttgatgctagaaaaataacagaaagtta---ttgacttgtagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcacgccaagttagtcccaacaattaattagaattcaaaatgaatctgcagGAGTCTACATCTCTTAAAGACATCCCAGTTGTGATCATGTCCTCTGAGAATATCCCTTCTAGGATTACCAG
                         aattaat  putative branch site (score: 3)
                      aacaattaattagaat  TA-rich tract