Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgagaatattatccccttgctttgttgtcgttttgtctctatggacactttctatctatgctcttcataattttctttctctcttttggttaattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTTAACGAAGAAGCATTGCTCGCTAAATGCCTTGGTAGAAGGATCTGTAGTG

Basic information

species Vitis vinifera
transcript Vv13s0067g03360.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G36120.1 (Glycine max), 3'ss of exon 2
------------------------------------------------------------------------tgagaata-ttatccccttgctttgttgtcgttttgtctctatggacactttctatc-tatgctcttcataattt---tctttctctcttttggttaa--------ttttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTTAACGAAGAAGCATTGCTCGCTAAATGCCTTGGTAGAAGGATCTGTAGTG
                                                                        || || ||  || || |     | | | |  |||| | ||   |   | || ||  | |   || ||||||| |    |||   |    | || || |        |  ||||||||||||||| |  ||||||||||| || ||||| || || ||||| ||  | ||||||||| |||| || ||||||||||||||||| || |||| | 
gtgagtattgatacccacctaatgcccttatattaattagtatatgtgcttgtagttggctgtgatttttcttgggactaactaaccacacaagtggctat-attttctgtcctcgacgatttcctgacattcacttttcataactgcgatctacttaaaatgtgcttgaaacctgtgtgctcagGAAATATTGGAAGGGGTAACTGACATTGACTTGGTGGTCAATCTGAAGCTCCAAGAAGAAGCACTGCTTGCAAAATGCCTTGGTAGAAGAATTTGTAATC

upper sequence: Vv13s0067g03360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G33390.1 (Glycine max), 3'ss of exon 2
--tgagaatattatccccttgctttgttgtcgttttgtctctatggacactttctatctatgctcttcataattttctttctctcttttggttaattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTTAACGAAGAAGCATTGCTCGCTAAATGCCTTGGTAGAAGGATCTGTAGTG
        | |  |||||    |  ||||      | ||   |    ||||||  ||    ||  || |  |   |  | ||     |  ||   || ||||||||||||||| |  ||||||||||| ||  |||| || || ||||| ||  | ||||||||| |||| || ||||||||||||||||| || || | | 
atattttctgtcctcccccctttaagttgcgacaatttcctgacattcacttttcataacagcgatttactaaaattgtgcttaaaatctgt--gttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTCCAAGAAGAAGCACTGCTTGCAAAATGCCTTGGTAGAAGAATTTGCAATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349813609|gb|FQ413843.1|FQ413843
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349810448|gb|FQ401894.1|FQ401894
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349827927|gb|FQ422795.1|FQ422795
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351039070|gb|FQ457745.1|FQ457745
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349811291|gb|FQ406279.1|FQ406279
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351042081|gb|FQ456291.1|FQ456291
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351038944|gb|FQ457619.1|FQ457619
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351027980|gb|FQ425881.1|FQ425881
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349818923|gb|FQ411618.1|FQ411618
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351037136|gb|FQ456969.1|FQ456969
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349821723|gb|FQ408161.1|FQ408161
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351026159|gb|FQ428171.1|FQ428171
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349815225|gb|FQ400380.1|FQ400380
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351051784|gb|FQ455198.1|FQ455198
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349809244|gb|FQ399018.1|FQ399018
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349822702|gb|FQ398089.1|FQ398089
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351033351|gb|FQ446583.1|FQ446583
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349809198|gb|FQ398971.1|FQ398971
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|110382919|gb|EC947249.1|EC947249
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349816719|gb|FQ404966.1|FQ404966
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349811437|gb|FQ409433.1|FQ409433
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|110401329|gb|EC967937.1|EC967937
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349811467|gb|FQ409463.1|FQ409463
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349816026|gb|FQ403643.1|FQ403643
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351052454|gb|FQ452487.1|FQ452487
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349821416|gb|FQ411037.1|FQ411037
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349819653|gb|FQ413537.1|FQ413537
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|352786628|gb|FQ479835.1|FQ479835
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349818660|gb|FQ403295.1|FQ403295
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|110419722|gb|EC985971.1|EC985971
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351045709|gb|FQ440894.1|FQ440894
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351039247|gb|FQ457922.1|FQ457922
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349821231|gb|FQ404363.1|FQ404363
EST:     GTGAAACAGGATTTATTCTTGATGGATTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351031699|gb|FQ459956.1|FQ459956
EST:     GTGAAACAGGATTTATTCTTGATGGTCTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349813663|gb|FQ413897.1|FQ413897
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349819620|gb|FQ413504.1|FQ413504
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349814003|gb|FQ414237.1|FQ414237
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351044818|gb|FQ449072.1|FQ449072
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351036476|gb|FQ457189.1|FQ457189
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351045854|gb|FQ441039.1|FQ441039
EST:     GTGAAACAGGATTTATTCTTGATGGTCTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349821007|gb|FQ404260.1|FQ404260
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349826777|gb|FQ418868.1|FQ418868
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349808767|gb|FQ406617.1|FQ406617
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349818873|gb|FQ409774.1|FQ409774
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|352798752|gb|FQ478387.1|FQ478387
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349816716|gb|FQ404963.1|FQ404963
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351048883|gb|FQ449726.1|FQ449726
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349816507|gb|FQ403882.1|FQ403882
EST:     GTGAAACGGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACGGGCG                         GAGATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351052139|gb|FQ450709.1|FQ450709
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGACTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349807822|gb|FQ402223.1|FQ402223
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|352795584|gb|FQ480172.1|FQ480172
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351052923|gb|FQ453910.1|FQ453910
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351055916|gb|FQ453377.1|FQ453377
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349816756|gb|FQ399624.1|FQ399624
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349807637|gb|FQ402028.1|FQ402028
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349815113|gb|FQ410336.1|FQ410336
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349807966|gb|FQ402357.1|FQ402357
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351036761|gb|FQ457474.1|FQ457474
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349822319|gb|FQ412583.1|FQ412583
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351045592|gb|FQ440777.1|FQ440777
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349814051|gb|FQ414309.1|FQ414309
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATAT-GGAAGGATGTAACTGACATCGATTTGGTAGTTTACCTGAAACT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGA-GGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACT
EST: gi|351051703|gb|FQ449517.1|FQ449517
EST:     GTGAAACAGGATTTATTCTTGATGGTCTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349816078|gb|FQ399309.1|FQ399309
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349820194|gb|FQ406870.1|FQ406870
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349830927|gb|FQ418211.1|FQ418211
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349809165|gb|FQ398906.1|FQ398906
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351051821|gb|FQ455235.1|FQ455235
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|110382917|gb|EC947247.1|EC947247
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351056586|gb|FQ442414.1|FQ442414
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349811846|gb|FQ410643.1|FQ410643
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAATCTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349815144|gb|FQ410367.1|FQ410367
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351012757|gb|FQ430320.1|FQ430320
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349816501|gb|FQ403876.1|FQ403876
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|352786276|gb|FQ478887.1|FQ478887
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACCGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|351045174|gb|FQ451622.1|FQ451622
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349810804|gb|FQ403047.1|FQ403047
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
EST: gi|349818669|gb|FQ403503.1|FQ403503
EST:     GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCG                         GAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT
genomic: GTGAAACAGGATTTATTCTTGATGGTTTCCCTCGAACAATAAGACAGGCGgtgagcacat ... taattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactttctatctatgctcttcataattttctttctctcttttggttaattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTTAACGAAGAAGCATTGCTCGCTAAATGCCTTGGTAGAAGGATCTGTAGTG
                                          ggttaat  putative branch site (score: 4)
                         ttttctttctctcttt  CT-rich tract
                  ttcataattttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgagaatattatccccttgctttgttgtcgttttgtctctatggacactttctatctatgctcttcataattttctttctctcttttggttaattttcagGAAATATTGGAGGATGTAACTGACATCGATTTGGTAGTTAACCTGAAACTTAACGAAGAAGCATTGCTCGCTAAATGCCTTGGTAGAAGGATCTGTAGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - -tcccctt
- - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - ctctatg