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...aactaatttgcaattggactatctcttcatgtattaatgttcaaattttatttttacagaattctattctgaagcttttaaattttgtattttcctccagACAGTATTGAAAATTTGCCCAAACTGGTGGAGGATATTGTCCAGACATCTATAAACACAGGTCCACGTGGAGCCCTAAGGGCAGCTCAAGGTATTCAAGC
species | Vitis vinifera |
transcript | Vv13s0067g03210.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCGCCCGATATTCTCAAGCACAGGATCGGTTTTCCTCGCGTCTTCAAG ACAGTATTGAAAATTTGCCCAAACTGGTGGAGGATATTGTCCAGACATCTAEST: gi|110723086|gb|EE099996.1|EE099996
genomic: TTTCGCCCGATATTCTCAAGCACAGGATCGGTTTTCCTCGCGTCTTCAAGgtattactgc ... tttcctccagACAGTATTGAAAATTTGCCCAAACTGGTGGAGGATATTGTCCAGACATCTA
EST: TTTCGCCCGATATTCTCAAGCACAGGATCGATTTTCCTCGCGTCTTCAAG ACAGTATTGAAAATTTGCCCAAACTGGTGGAGGATATTGTCCAGACATCTAEST: gi|26262463|gb|CA813526.1|CA813526
genomic: TTTCGCCCGATATTCTCAAGCACAGGATCGGTTTTCCTCGCGTCTTCAAGgtattactgc ... tttcctccagACAGTATTGAAAATTTGCCCAAACTGGTGGAGGATATTGTCCAGACATCTA
EST: TTTCGCCCGATATTCTCAAGCACAGGATCGGTTTTCCTCGCGTCTTCTAG ACAGTATTGAAAATTTGCCCAAACTGGTGGAGGATATTGTCCAGACATCTAEST: gi|110391735|gb|EC956734.1|EC956734
genomic: TTTCGCCCGATATTCTCAAGCACAGGATCGGTTTTCCTCGCGTCTTCAAGgtattactgc ... tttcctccagACAGTATTGAAAATTTGCCCAAACTGGTGGAGGATATTGTCCAGACATCTA
EST: TTTCGCCCGATATTCTCAAGCACAGGATCGGTTTTCCTCGCGTCTTCAAG ACAGTATTGAAAATTTGCCCAAACTGGTGGAGGATATTGTCCAGACATCTA
genomic: TTTCGCCCGATATTCTCAAGCACAGGATCGGTTTTCCTCGCGTCTTCAAGgtattactgc ... tttcctccagACAGTATTGAAAATTTGCCCAAACTGGTGGAGGATATTGTCCAGACATCTA
ttttatttttacagaattctattctgaagcttttaaattttgtattttcctccagACAGTATTGAAAATTTGCCCAAACTGGTGGAGGATATTGTCCAGACATCTATAAACACAGGTCCACGTGGAGCCCTAAGGGCAGCTCAAGGTATTCAAGC
ttttgtattttcctcc CT-rich tract
aagcttttaaattttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactaatttgcaattggactatctcttcatgtattaatgttcaaattttatttttacagaattctattctgaagcttttaaattttgtattttcctccagACAGTATTGAAAATTTGCCCAAACTGGTGGAGGATATTGTCCAGACATCTATAAACACAGGTCCACGTGGAGCCCTAAGGGCAGCTCAAGGTATTCAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
aactaat
- - - - - - - - - - - - - tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaagct