Sequence
atgc intronic sequence ATGC exonic sequence...agctctgatttcatgtgcaacaatcaattgtcgtttcatttgatatgggaaaactaaaaaaaaaaccctaattatattcattgccttttgattcacacagGAGCTACTACAGATGCACGAGGAAGCATGAGCAAAGCTGCCGAGCTACGAAACAAGTACAAAGAATGAAGGAGAATCCCATAATGTATCACACAACATAC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690014|gb|EC939419.1|EC939419EST: GCATGGAGGAAATATGGGCAAAAGGAGATCCTCAATGCAAAATTCCCAAG GAGCTACTACAGATGCACGAGGAAGCATGAGCAAAGCTGCCGAGCTACGAA
genomic: GCATGGAGGAAATATGGGCAAAAGGAGATCCTCAATGCAAAATTCCCAAGgtatataaag ... attcacacagGAGCTACTACAGATGCACGAGGAAGCATGAGCAAAGCTGCCGAGCTACGAA
EST:
gi|349809970|gb|FQ398595.1|FQ398595EST: GCATGGAGGAAATATGGGCAAAAGGAGATCCTCAATGCAAAATTCCCAAG GAGCTACTACAGATGCACGAGGAAGCATGAGCAAAGCTGCCGAGCTACGAA
genomic: GCATGGAGGAAATATGGGCAAAAGGAGATCCTCAATGCAAAATTCCCAAGgtatataaag ... attcacacagGAGCTACTACAGATGCACGAGGAAGCATGAGCAAAGCTGCCGAGCTACGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgggaaaactaaaaaaaaaaccctaattatattcattgccttttgattcacacagGAGCTACTACAGATGCACGAGGAAGCATGAGCAAAGCTGCCGAGCTACGAAACAAGTACAAAGAATGAAGGAGAATCCCATAATGTATCACACAACATAC
aaactaaaaaaaaaac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agctctgatttcatgtgcaacaatcaattgtcgtttcatttgatatgggaaaactaaaaaaaaaaccctaattatattcattgccttttgattcacacagGAGCTACTACAGATGCACGAGGAAGCATGAGCAAAGCTGCCGAGCTACGAAACAAGTACAAAGAATGAAGGAGAATCCCATAATGTATCACACAACATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - -catgtgc
- - - - - - - - - - caatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctaat