Sequence
atgc intronic sequence ATGC exonic sequencegtagaaccctaattctgtctaccagtagtatttcatgttcttgattgattgataacttctcaaatcttacactgttaaattcagGAAGTCCCGGAAAGCCAAAGAGCCGACGCCGCCAATAGTCTGGTTTATGAGGCCAATGTGCGGCTAAGAGATCCGGTCTATGGTTGCATGGGTGCAATTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g02380.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G15050.1 (Glycine max), 3'ss of exon 1
-------------------------------------------gtagaaccctaattctgtctacca-gta----gtatttca--tgttcttgattg-attgataacttctcaaatcttacactgttaaattcagGAAGTCCCGGAAAGCCAAAGAGCCGACGCCGCCAATAGTCTGGTTTATGAGGCCAATGTGCGGCTAAGAGATCCGGTCTATGGTTGCATGGGTGCAATTT
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gtaaatatacacacacacggtacacataaataacactagctagctagttatttaattaaccatatcatataacatgtattccacttattatagattttaatcatatcatataatttcttcgacaatgtgttgtagGAAGTACCAGAGTGTCAAAGAGCTGATGCTGCAAATAGTCTAGTTTATGAGGCTAATGTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATTT
upper sequence: Vv13s0067g02380.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G39830.1 (Glycine max), 3'ss of exon 1
-----------------------------gtagaaccctaatt--ctgtctaccagtagtatttcatgttcttgattgattgataacttctcaaatcttacactgttaaatt-cagGAAGTCCCGGAAAGCCAAAGAGCCGACGCCGCCAATAGTCTGGTTTATGAGGCCAATGTGCGGCTAAGAGATCCGGTCTATGGTTGCATGGGTGCAATTT
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gtaaatacacacacacacactgtacacataaataacactggctagctagttatctaattaatcatatcatatacatgtgtattccacttattatagatttcaatcatatgttgtagGAAGTACCAGAGTGTCAAAGAGCTGATGCAGCAAATAGTCTAGTATATGAGGCTAATGTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATTT
upper sequence: Vv13s0067g02380.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G40470.1 (Arabidopsis thaliana), 3'ss of exon 2
----------gtagaacccta-attctgtctaccagtagtatttcatgttcttgattgattgataacttctcaaa---tcttacactgttaaatt---cagGAAGTCCCGGAAAGCCAAAGAGCCGACGCCGCCAATAGTCTGGTTTATGAGGCCAATGTGCGGCTAAGAGATCCGGTCTATGGTTGCATGGGTGCAATTT
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ttattactctgtatttcactatgcaaaccctgttaaaagaaaaaaagattaatggttt-tggcaaaattctcacaatgtgtaacaattccaaactaatcagGAAGTACCTGAGAGCCAGAGAGCAGATGCCGCGAATAGCCTTGTGTATGAAGCAAACGTGAGGCTAAGAGATCCGGTGTACGGATGCATGGGAGCCATCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttcatgttcttgattgattgataacttctcaaatcttacactgttaaattcagGAAGTCCCGGAAAGCCAAAGAGCCGACGCCGCCAATAGTCTGGTTTATGAGGCCAATGTGCGGCTAAGAGATCCGGTCTATGGTTGCATGGGTGCAATTT
tgttaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagaaccctaattctgtctaccagtagtatttcatgttcttgattgattgataacttctcaaatcttacactgttaaattcagGAAGTCCCGGAAAGCCAAAGAGCCGACGCCGCCAATAGTCTGGTTTATGAGGCCAATGTGCGGCTAAGAGATCCGGTCTATGGTTGCATGGGTGCAATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC