1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgacatgctgtcttgtttattggccttttgttttttcatttatttctttattttgtttgcttttttgtgatgtatcctaacacatgactaggtatcttcattattaatcccacatgaagatgcttacattataccctctattgccagATGTTGTCTCAATTCCAAAGACAAATGAGAACTTCCGTCTTCTTTATGACACCAAGGGCCGGTTCCGACTCCACTCAGTTAGGGATGAAGAGGCAAAG
species | Vitis vinifera |
transcript | Vv13s0067g01820.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTGATGGAAAAGTTAGGACAGATAAAACATATCCCTCTGG--TCATGG ATGTTGTCTCAATTCCAAAGACAAATGAGAACTTCCGTCTTCTTTATGACAEST: gi|26267144|gb|CA818207.1|CA818207
genomic: TGTTGATGGAAAAGTTAGGACAGATAAAACATATCCCTCTGGTTTCATGGgtatgacatg ... ctattgccagATGTTGTCTCAATTCCAAAGACAAATGAGAACTTCCGTCTTCTTTATGACA
EST: TGTTGATGGAAAAGTTAGGACAGATAAAACATATCCCTCTGGTTTCATGG ATGTTGTCTCAATTCCAAAGACAAATGAGAACTTCCGTCTTCTTTATGACAEST: gi|110686698|gb|EE064634.1|EE064634
genomic: TGTTGATGGAAAAGTTAGGACAGATAAAACATATCCCTCTGGTTTCATGGgtatgacatg ... ctattgccagATGTTGTCTCAATTCCAAAGACAAATGAGAACTTCCGTCTTCTTTATGACA
EST: TGTTGATGGAAAAGTTAGGACAGATAAAACATATCCCTCTGGTTTCATGG ATGTTGTCTCAATTCCAAATACAAATGAGAACTTCCGTCTTCTTTATGACAEST: gi|161717629|gb|FC066908.1|FC066908
genomic: TGTTGATGGAAAAGTTAGGACAGATAAAACATATCCCTCTGGTTTCATGGgtatgacatg ... ctattgccagATGTTGTCTCAATTCCAAAGACAAATGAGAACTTCCGTCTTCTTTATGACA
EST: TGTTGATGGAAAAGTTAGGACAGATAAAACATATCCCTCTGGTTTCATGG ATGTTGTCTCAATTCCAAATACAAATGAGAACTTCCGTCTTCTTTATGACAEST: gi|110708636|gb|EE086405.1|EE086405
genomic: TGTTGATGGAAAAGTTAGGACAGATAAAACATATCCCTCTGGTTTCATGGgtatgacatg ... ctattgccagATGTTGTCTCAATTCCAAAGACAAATGAGAACTTCCGTCTTCTTTATGACA
EST: TGTTGATGGAAAAGTTAGGACAGATAAAACATATCCCTCTGGTTTCATGG ATGTTGTCTCAATTCCAAAGACAAATGAGAACTTCCGTCTTCTTTATGACA
genomic: TGTTGATGGAAAAGTTAGGACAGATAAAACATATCCCTCTGGTTTCATGGgtatgacatg ... ctattgccagATGTTGTCTCAATTCCAAAGACAAATGAGAACTTCCGTCTTCTTTATGACA
tatcttcattattaatcccacatgaagatgcttacattataccctctattgccagATGTTGTCTCAATTCCAAAGACAAATGAGAACTTCCGTCTTCTTTATGACACCAAGGGCCGGTTCCGACTCCACTCAGTTAGGGATGAAGAGGCAAAG
tgcttac putative branch site (score: 2)
ccctctatt putative PPT
tcattattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacatgctgtcttgtttattggccttttgttttttcatttatttctttattttgtttgcttttttgtgatgtatcctaacacatgactaggtatcttcattattaatcccacatgaagatgcttacattataccctctattgccagATGTTGTCTCAATTCCAAAGACAAATGAGAACTTCCGTCTTCTTTATGACACCAAGGGCCGGTTCCGACTCCACTCAGTTAGGGATGAAGAGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG