Sequence
atgc intronic sequence ATGC exonic sequence...attgtcatttagtagtttcattggtggtctatgtgtcaatttcaaagttatttgtttttcatatactttctggctcatgagtttaaacattcttttgaagCTCAACTTCCGGGAACCACCCAGGATCACTTGCAAATATTTAATATTGAGATGAAAGCCAAAATGAAATCATATCAAATGCCTGAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 2
attgtcatttagtagtttcattggtggtctatgtgtcaatttcaaag--ttatttgtttttcatatactttctggctcatgagtttaaacattcttttgaagCTCAACTTCCGGGAACCACCCAGGATCACTTGCAAATATTTAATATTGAGATGAAAGCCAAAATGAAATCATATCAAATGCCTGAGCAG
|| | | || || || || | | | | ||| || || ||| |||| | || ||| || | |||| | |||||| ||||||| ||||| | ||||| || || |||||| ||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||
gtttttagtttgttgtgcatgtgcttctgttgacgctgcttttgaaatattgtttacttttggtttatcttc--acttacaagttacatcattctgttgaagCCCAACTGCAAGGAACTACTCAAGATCACCTGCAAATATTTAACATTGAGATGAAAGCAAAGATGAAATCATATCAGATGCCTGAGCAG
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 2
attgtcatttagta-gtttcattggtggtctatgtgtcaatttcaaag--ttatttgtttttcatatactttctggctcatgagtttaaacattcttttgaagCTCAACTTCCGGGAACCACCCAGGATCACTTGCAAATATTTAATATTGAGATGAAAGCCAAAATGAAATCATATCAAATGCCTGAGCAG
| |||||| ||| | | | || ||| || || ||| |||| || ||| || | |||| | |||||| ||||||| ||||| | || || || || |||||| | ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||
-taagtttttagtttgttgtgcgtgcgcttctgttgctgcttttgaaatattgtttacttttggattatcttc--acttacaagttacatcattctcttgaagCCCAACTGCAAGGGACTACTCAAGATCACCTACAAATATTTAACATTGAGATGAAAGCAAAGATGAAATCATATCAGATGCCTGAGCAG
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 2
attgtcatttagtagtttcattggtg---gtctatgtgtcaatttcaaagttatttgtttttcatatactttctggctcatgagtttaaacattcttttgaagCTCAACTTCCGGGAACCACCCAGGATCACTTGCAAATATTTAATATTGAGATGAAAGCCAAAATGAAATCATATCAAATGCCTGAGCAG
| | |||| | | ||| | || ||||| | || | |||| |||| || || ||| || | |||| | |||| ||||||||||||| | ||||| || || |||||| | ||||| ||||| ||||| |||||||| || |||||||| ||||| ||||||||||||
ggttttatttgattatgtcacaagcttctgtttatgttgtaccttaattagtattacttttagat-tatattcc--cttctaagttatgtccttctcttgaagCTCAACTCCAAGGAACAACTCAAGATCACCTACAAATTTTTAACATTGAAATGAAAGCAAAGATGAAATCTTATCAGATGCCTGAGCAG
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 2
--attgtcatttagtagtttcattggtggtctatgtgtcaatttcaaagttatttgtttttcatatactttctggctcatgagtttaaacattcttttgaagCTCAACTTCCGGGAACCACCCAGGATCACTTGCAAATATTTAATATTGAGATGAAAGCCAAAATGAAATCATATCAAATGCCTGAGCAG
| | | | | | | || | ||| | || | |||||| |||| || ||| || | |||| | | ||| ||||||||||||| | ||||| || || |||||| | ||||| ||||| ||||| |||||||| || |||||||| ||||| ||||| ||||||
ttaaaatggctcaatgttcatagcttctgtttgtgttgtaccttaattagtatttgcttttggattatattcc--cttctaagttacatccctctcttgaagCTCAACTCCAAGGAACAACTCAAGATCACCTACAAATTTTTAACATTGAAATGAAAGCAAAGATGAAATCTTATCAGATGCCCGAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttatttgtttttcatatactttctggctcatgagtttaaacattcttttgaagCTCAACTTCCGGGAACCACCCAGGATCACTTGCAAATATTTAATATTGAGATGAAAGCCAAAATGAAATCATATCAAATGCCTGAGCAG
cattctttt CT-rich tract
tttgtttttcatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attgtcatttagtagtttcattggtggtctatgtgtcaatttcaaagttatttgtttttcatatactttctggctcatgagtttaaacattcttttgaagCTCAACTTCCGGGAACCACCCAGGATCACTTGCAAATATTTAATATTGAGATGAAAGCCAAAATGAAATCATATCAAATGCCTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - -tggtggt
- - - - - - - - - - - - - - ctatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgagt