1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagctatacatctctctgtctttctctttctcagactctcacgatcacccactcaatcactcactttgtcatcaagttaattaattattgcctttgtcggtgtgggtgatgtattattttgaatgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCACCATCCCCATAACTGGAACCGGCATCAACCCAGCTCGGAGCCTGGGTG
species | Vitis vinifera |
transcript | Vv13s0067g00220.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGGTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCEST: gi|161712606|gb|FC062208.1|FC062208
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCA-TCGGGTTCGCAGTGTTCTEST: gi|161713281|gb|FC063083.1|FC063083
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCT
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGC-AATCGGGTTCGCAGTGT-CTTGGTEST: gi|110689996|gb|EE066710.1|EE066710
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGT
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCEST: gi|161714519|gb|FC062969.1|FC062969
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTG-CCEST: gi|161713584|gb|FC063407.1|FC063407
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAAEST: gi|161716221|gb|FC069499.1|FC069499
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAA
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCCATCGGGTTCGCAGTGTTCTEST: gi|33409723|gb|CF215350.1|CF215350
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCT
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCEST: gi|161720336|gb|FC071189.1|FC071189
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCEST: gi|161719835|gb|FC065771.1|FC065771
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCEST: gi|33409719|gb|CF215346.1|CF215346
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCEST: gi|161713560|gb|FC062505.1|FC062505
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCEST: gi|161719932|gb|FC066129.1|FC066129
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGC
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCAEST: gi|161713874|gb|FC062564.1|FC062564
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCA
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCEST: gi|161715641|gb|FC067783.1|FC067783
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTEST: gi|33409074|gb|CF214701.1|CF214701
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACT
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCEST: gi|161717612|gb|FC065625.1|FC065625
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCEST: gi|161712029|gb|FC060045.1|FC060045
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCEST: gi|110732652|gb|EE108136.1|EE108136
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
aattaattattgcctttgtcggtgtgggtgatgtattattttgaatgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCACCATCCCCATAACTGGAACCGGCATCAACCCAGCTCGGAGCCTGGGTG
aattaat putative branch site (score: 3)
tattattttgaatgtg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctatacatctctctgtctttctctttctcagactctcacgatcacccactcaatcactcactttgtcatcaagttaattaattattgcctttgtcggtgtgggtgatgtattattttgaatgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCACCATCCCCATAACTGGAACCGGCATCAACCCAGCTCGGAGCCTGGGTG
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